Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_L11
         (1210 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    33   0.11 
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    27   6.9  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    27   6.9  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    26   9.1  

>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = +2

Query: 707 HFVTKKE*LVFHNTFLHNNKQY*HHTMYVGTEYYILQQYELLVRYK-VNGFYT*IRQVQV 883
           HFV  KE L F N + H  K Y  ++  +  +      Y++   +K    F T +R+  +
Sbjct: 168 HFVLNKELLSFRNDYEHRRKHYEKYSQCLNKQLDHFFSYKVTTVHKSYQRFATLLRRHLL 227

Query: 884 HKCFQ--HNNCEKRGHQ 928
            K  +  H+ CEKR ++
Sbjct: 228 DKTAKRYHDLCEKRPYK 244


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 584 LNIFYFTISTYLNYAFLSHKHFIFTDMFDKYIC 682
           L +++F I   LN  FLS K     DM  + IC
Sbjct: 453 LCLYFFLIRLCLNRPFLSKKGLYVNDMTPRNIC 485


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 584 LNIFYFTISTYLNYAFLSHKHFIFTDMFDKYICS 685
           ++++Y  I   LN  FLS K     D+  K IC+
Sbjct: 482 VSLYYHLIRICLNRPFLSRKEVTANDLTPKTICT 515


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 711 LLQKKSSWSFTIHFYIIINSTNI 779
           +L KK S +FTI  +IIIN T I
Sbjct: 343 VLGKKGSMAFTILSFIIINFTGI 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,286,213
Number of Sequences: 5004
Number of extensions: 84512
Number of successful extensions: 156
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 653435696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)