Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_L11
         (1210 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110498-4|CAE18014.2|  336|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z83123-4|CAB05608.1|  316|Caenorhabditis elegans Hypothetical pr...    31   2.2  
Z83123-1|CAB05607.1|  316|Caenorhabditis elegans Hypothetical pr...    31   2.2  
U53139-7|AAK18935.1|  235|Caenorhabditis elegans Hypothetical pr...    29   5.0  

>AL110498-4|CAE18014.2|  336|Caenorhabditis elegans Hypothetical
            protein Y64G10A.8 protein.
          Length = 336

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -2

Query: 1086 LXFI*GALLIRPLXVWXXLKIPKRSPVCIHTNNFLILIITCXTVFI-CLESAF 931
            L F+  ++LI PL  W   +I K      H N  ++LII C  +FI C +  F
Sbjct: 25   LSFLILSILILPLMGWLITRIAKNQ--LYHLNTRILLIIHCSGIFIHCADRLF 75


>Z83123-4|CAB05608.1|  316|Caenorhabditis elegans Hypothetical
           protein T04A11.5 protein.
          Length = 316

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +3

Query: 336 SLFCISFFTPSVQVVACGH-VLGTYIFLYNSSRNI--QILFSVSVGTI 470
           S F + +FTP  +V  CGH  L T   L+N   N+  +I F    G +
Sbjct: 64  SQFSLRWFTPKTEVPLCGHATLATSHVLFNEVGNVNKEIKFDTQSGVL 111


>Z83123-1|CAB05607.1|  316|Caenorhabditis elegans Hypothetical
           protein T04A11.2 protein.
          Length = 316

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +3

Query: 336 SLFCISFFTPSVQVVACGH-VLGTYIFLYNSSRNI--QILFSVSVGTI 470
           S F + +FTP  +V  CGH  L T   L+N   N+  +I F    G +
Sbjct: 64  SQFSLRWFTPKTEVPLCGHATLATSHVLFNEVGNVNKEIKFDTQSGVL 111


>U53139-7|AAK18935.1|  235|Caenorhabditis elegans Hypothetical
           protein F18E3.10 protein.
          Length = 235

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +3

Query: 627 LFYHTNILFLQTCLINISVHI 689
           LFY TNI+FLQ C+I I  H+
Sbjct: 116 LFYLTNIVFLQGCMIFIFWHM 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,546,810
Number of Sequences: 27780
Number of extensions: 469947
Number of successful extensions: 893
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3328592102
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)