Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_L08
         (1224 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    57   1e-06
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    40   0.099
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    39   0.23 
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    38   0.70 
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    35   3.7  

>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 56.8 bits (131), Expect = 1e-06
 Identities = 27/43 (62%), Positives = 27/43 (62%)
 Frame = -1

Query: 906 PFXGLLXTCXFLXYPLIXWITVLPPLSEXIPLAXXXRPSAXSQ 778
           P    L TC F  YPLI WITVLPPLSE  PLA   RPS  SQ
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERPSVASQ 61


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 40.3 bits (90), Expect = 0.099
 Identities = 25/57 (43%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 706 CINESAXPRGKAVCXLGALPXPRSLTXCARSXGXGXRYXLTQRG-*YGYPXNQGIXQ 873
           CI + A  R +AV  L ALP  RS T C RS G G        G  YG P  QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 39.1 bits (87), Expect = 0.23
 Identities = 18/33 (54%), Positives = 20/33 (60%)
 Frame = +1

Query: 730 RGKAVCXLGALPXPRSLTXCARSXGXGXRYXLT 828
           R   +C  G +P PRSLT  ARS G G RY LT
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 37.5 bits (83), Expect = 0.70
 Identities = 18/24 (75%), Positives = 18/24 (75%)
 Frame = +3

Query: 813 AVSXHSKGVIRLSTXSGDXXGXNM 884
           AVS HSK VIRLST SGD  G NM
Sbjct: 36  AVSAHSKAVIRLSTESGDNAGKNM 59


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 35.1 bits (77), Expect = 3.7
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -1

Query: 285 WYLPVRTHKRSYHQ 244
           WYLP RTHKRSYH+
Sbjct: 572 WYLPARTHKRSYHR 585


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 684,503,757
Number of Sequences: 1657284
Number of extensions: 9296472
Number of successful extensions: 12242
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12241
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 124011183115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)