Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_L06
         (1215 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    24   2.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   2.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   2.0  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   4.6  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 81  HCXQSFVCFXSPSRQWQPSQIS 146
           HC + F  F +  R+W PS ++
Sbjct: 605 HCPEGFNEFYNQRRRWMPSTMA 626


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 81  HCXQSFVCFXSPSRQWQPSQIS 146
           HC + F  F +  R+W PS ++
Sbjct: 838 HCPEGFNEFYNQRRRWMPSTMA 859



 Score = 24.2 bits (50), Expect = 2.0
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 770  CALSIFIIAAFIHHGYFDCFVFAHV-EVTVTGQSLV 666
            C  + FIIAA +H   F+C  +  +  VTV    L+
Sbjct: 983  CMAAEFIIAALLHPQEFNCLKYGVIYYVTVPSMYLL 1018


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 81  HCXQSFVCFXSPSRQWQPSQIS 146
           HC + F  F +  R+W PS ++
Sbjct: 838 HCPEGFNEFYNQRRRWMPSTMA 859



 Score = 24.2 bits (50), Expect = 2.0
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 770  CALSIFIIAAFIHHGYFDCFVFAHV-EVTVTGQSLV 666
            C  + FIIAA +H   F+C  +  +  VTV    L+
Sbjct: 983  CMAAEFIIAALLHPQEFNCLKYGVIYYVTVPSMYLL 1018


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 910 KACIAPKSICIFPNSKLKRRRISKM 984
           +AC++P+   +  NS+  R R  KM
Sbjct: 15  EACVSPEGSLLPSNSREMRNRAEKM 39


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,294
Number of Sequences: 336
Number of extensions: 4496
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 35452545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)