Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_L06
         (1215 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    29   1.7  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    29   1.7  
SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch...    27   4.0  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   4.0  
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    27   6.9  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   6.9  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   9.2  

>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
            Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +3

Query: 840  KDKDGITQLQEALKDLKTLETAQQSMYSTEVDLY-LPKFKIETETNLKDVLSNMNVNKYS 1016
            K +   +Q    LK   T  T   S+ ST  D++ LP+  ++++TN K    N+N++  S
Sbjct: 774  KTRHDSSQSARQLKARSTATTISISL-STVSDVFTLPRNNLKSKTNTKKCRDNLNLSGLS 832

Query: 1017 TTMLN 1031
            ++  N
Sbjct: 833  SSTCN 837


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = +2

Query: 248 VLPPL--AQLALASDGETHEXL---LKAIGFPDDDAIRTEFASKSRDLRSIKGVELKMAN 412
           ++ PL   QL      +TH  L   L+   +  D      FA + ++L   KGV+L M +
Sbjct: 39  IIKPLEWGQLNFIHTTDTHGWLGGHLRDARYKADFGEFKSFALRMKELADFKGVDLLMVD 98

Query: 413 KVYVHDGGKLDE 448
              +HDG  L +
Sbjct: 99  TGDLHDGNGLSD 110


>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 469

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 460 RFQGTSSIRTSKILISRRIQSQLSLLTIG*KKIPITALR 576
           RFQ T SIRT        I +QL + +IG K +P+  ++
Sbjct: 308 RFQITDSIRTDAESKFTTIPAQLFIRSIGYKSMPLPGMK 346


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 20/49 (40%), Positives = 28/49 (57%)
 Frame = -1

Query: 423 TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPIAFKSXSWVSPSEA 277
           TY+   I SS+ L+   S L++++S  +ASSS  PI   S S VS   A
Sbjct: 665 TYSSSVIPSSSTLVSSSSSLIVSSS-PVASSSSSPIP-SSSSLVSTYSA 711


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
 Frame = +3

Query: 762 ESAALNAQLIEIPYKGDQSSLI--------VVLPKDKDGITQLQEALKDLKT-LETAQ-Q 911
           E  A  + L+ I + GD   ++        V LPKDK G+   +EAL  + T  E A  Q
Sbjct: 513 EGVARLSHLLNIEFLGDLLQVLRELVMDDTVFLPKDKSGVQATREALLTVSTAFEIASAQ 572

Query: 912 SMYSTEVDLYLPKF 953
            +    +DL L  F
Sbjct: 573 GVGKLNLDLDLGLF 586


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 23/87 (26%), Positives = 37/87 (42%)
 Frame = +3

Query: 708  DKTIKVPMMYKRGDYKYGESAALNAQLIEIPYKGDQSSLIVVLPKDKDGITQLQEALKDL 887
            D   K+   +   + K  E   +N +L  +  K  +SSL V +  +   +TQL E  K+ 
Sbjct: 836  DNVQKLMHKHVNQESKVSELKEVNGKL-SLDLKNLRSSLNVAISDNDQILTQLAELSKNY 894

Query: 888  KTLETAQQSMYSTEVDLYLPKFKIETE 968
             +LE     + S    L   K  + TE
Sbjct: 895  DSLEQESAQLNSGLKSLEAEKQLLHTE 921


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 624 VNAIYFKGAWSSKFDERLTSDRDFYVSKDKTI 719
           V+A+ F+  W +    R T D DF   K KTI
Sbjct: 68  VSALKFEWNWQNLGISRYTKDCDFRSKKQKTI 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,045,372
Number of Sequences: 5004
Number of extensions: 78297
Number of successful extensions: 227
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 657420060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)