Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_L05
(1221 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 99 6e-22
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 50 7e-07
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 43 8e-05
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 43 1e-04
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 42 1e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 38 0.002
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 36 0.011
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 36 0.011
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 35 0.026
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 35 0.026
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 32 0.14
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 29 0.99
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 29 1.7
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc... 28 2.3
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 27 4.0
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 27 4.0
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 27 5.3
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos... 27 5.3
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 26 9.2
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 26 9.2
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 99 bits (238), Expect = 6e-22
Identities = 52/120 (43%), Positives = 75/120 (62%)
Frame = +3
Query: 573 QKEYRSKSRGLDPKLEDLPPEERDLRTVFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITC 752
+K RS+ R KL + EERD RTVF QL+ R+ +++L +FF G VRD +++
Sbjct: 218 RKRSRSRPRERSSKLSE---EERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRD 274
Query: 753 NKTRRFKGIAYIEFKDAESVPLALGLTGQKLLGVPIIVQHTQAEKNRVGNTLPNLAPKTS 932
+ R KG+AY+EF +SV A+ L+G++LLG+P+IVQ T+AEKNR LA S
Sbjct: 275 KISGRSKGVAYVEFCHEDSVQAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAAS 334
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 50.0 bits (114), Expect = 7e-07
Identities = 33/110 (30%), Positives = 52/110 (47%)
Frame = +3
Query: 564 REPQKEYRSKSRGLDPKLEDLPPEERDLRTVFCMQLSQRIRAKDLEEFFSSVGKVRDVRL 743
R P + R G + + +P T LS + DL +FF V +RL
Sbjct: 66 RSPPESRREGGMGSGYQRDAIPIPSEPPFTAHVGNLSFDLTENDLGDFFGE--GVTSIRL 123
Query: 744 ITCNKTRRFKGIAYIEFKDAESVPLALGLTGQKLLGVPIIVQHTQAEKNR 893
+ T R +G Y+EF+ A+++ AL L+G+ L+G P+ + T AE R
Sbjct: 124 VIDPLTERSRGFGYVEFETADTLSAALALSGEDLMGRPVRI--TVAEPRR 171
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 43.2 bits (97), Expect = 8e-05
Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Frame = +3
Query: 606 DPKLEDLPPEERDLRTVFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAY 785
DP L + + R V+ LS ++R +L+EF VG V + ++ KG A
Sbjct: 52 DPHLGNGQKYTQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNL-PNGLSKGCAI 110
Query: 786 IEFKDAESVPLAL-GLTGQKLLGVPIIVQHTQAEKNRVGNTLPNLAPK-TSNG----PTR 947
IE+ AE A+ L+ QK +G + ++ + + R G++ +++P +SNG P R
Sbjct: 111 IEYSTAEEARTAIKTLSNQKFMGRLVYIREDREQNARFGSS--SVSPSASSNGKDSEPDR 168
Query: 948 -LYVGS 962
L+VG+
Sbjct: 169 QLFVGN 174
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 42.7 bits (96), Expect = 1e-04
Identities = 22/69 (31%), Positives = 32/69 (46%)
Frame = +3
Query: 651 TVFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAESVPLALGL 830
TVF LS DL F G ++ +RL T ++ R KG Y+ F D +S + +
Sbjct: 367 TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEM 426
Query: 831 TGQKLLGVP 857
G + G P
Sbjct: 427 NGHFIAGRP 435
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 42.3 bits (95), Expect = 1e-04
Identities = 25/73 (34%), Positives = 35/73 (47%)
Frame = +3
Query: 627 PPEERDLRTVFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAE 806
P + R VF L+ + L +F G + VR++ KT KG AYI+FKD
Sbjct: 263 PMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTM 322
Query: 807 SVPLALGLTGQKL 845
V AL L +K+
Sbjct: 323 GVDKALLLNEKKM 335
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 38.3 bits (85), Expect = 0.002
Identities = 45/177 (25%), Positives = 71/177 (40%), Gaps = 20/177 (11%)
Frame = +3
Query: 465 EIKKNVVAATRTEVG-KEIAVAIKTFIKKKKTP--EREPQKEYRSKSRGLDP-KLEDLPP 632
++KK AA ++V AV T + TP E +P+K+ +P + P
Sbjct: 5 DLKKQADAAVESDVNTNNEAVESSTKEESSNTPSTETQPEKKAEEPEAAAEPSESTSTPT 64
Query: 633 EERDLRT----------VFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIA 782
+ T ++ +L + L E F+S+G V +R+ TRR G A
Sbjct: 65 NASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYA 124
Query: 783 YIEFKDAESVPLALGLTGQKLL-GVPIIVQHTQAE----KNRVGNT-LPNLAPKTSN 935
Y+ F + E AL L+ G P + +Q + K GN + NL P N
Sbjct: 125 YVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDN 181
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 35.9 bits (79), Expect = 0.011
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 642 DLRTVFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAE 806
+ + +F L+ DL+ F G++ V + KT KG AYI+F DA+
Sbjct: 321 ETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDAD 375
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 35.9 bits (79), Expect = 0.011
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 1/122 (0%)
Frame = +3
Query: 507 GKEIAVAIKTFIKKKKTPEREPQKEYRSKSRGLDPKLEDLPPEERDLRT-VFCMQLSQRI 683
G+ TF K K KE+ + +DPK +P EE++ +F +
Sbjct: 201 GRSRGFGFLTF-KNPKCVNEVMSKEHHLDGKIIDPK-RAIPREEQEKTAKMFVGGVPGDC 258
Query: 684 RAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAESVPLALGLTGQKLLGVPII 863
++ FF+ G+V D L+ T R +G ++ +++ +V + + G P+
Sbjct: 259 TEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVE 318
Query: 864 VQ 869
V+
Sbjct: 319 VK 320
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 34.7 bits (76), Expect = 0.026
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Frame = +3
Query: 651 TVFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAESVP-LALG 827
T+F L+ + + DL FFS VG ++ ++T +T +G ++ F E A
Sbjct: 6 TLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKE 65
Query: 828 LTGQKLLGVPIIVQHTQAEKNRVGNTLPNLAPK 926
L +KL G + + K +T N A K
Sbjct: 66 LKNKKLHGRILRLDFATPRKRSEVDTDQNKAVK 98
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 34.7 bits (76), Expect = 0.026
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Frame = +3
Query: 567 EPQKEYRSKSRGLDPKLEDLPPEERDL-----RTVFCMQLSQRIRAKDLEEFFSSVGKVR 731
E QK+ R + R + K+ D P +R + +T+F +LS + D+E F+ G +
Sbjct: 70 EKQKQQRERLRSMI-KVWD-PDHDRHVIGDPYKTMFLSRLSYDTKESDIEREFTRYGPIE 127
Query: 732 DVRLITCNKTRRFKGIAYIEFKDAESVPLAL-GLTGQKLLGVPIIV 866
+R++ T + G A++ F+ + +A G L G I+V
Sbjct: 128 RIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVV 173
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 32.3 bits (70), Expect = 0.14
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +3
Query: 627 PPEERDLRTVFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAE 806
PPE +F +L+ + +DLE FS GK+ ++I +T A+IEF + E
Sbjct: 241 PPEN----VLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKE 296
Query: 807 SVPLA 821
SV A
Sbjct: 297 SVEKA 301
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 29.5 bits (63), Expect = 0.99
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +3
Query: 444 TAREKENEIKKNVVAATRTE--VGKEIAVAIKTFIKKKKTPEREPQKEYRSKSRGLDPKL 617
T ++ N+I K V+ + E V E +++ T K PE +P+K SK + K
Sbjct: 410 TLHKETNKIDKLYVSENKAESAVASESSLSEGTLALKAPAPENKPEKSSTSKPPVPENKA 469
Query: 618 ED 623
ED
Sbjct: 470 ED 471
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 28.7 bits (61), Expect = 1.7
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 6/132 (4%)
Frame = +3
Query: 543 KKKKTPEREPQKEYRSKSRGLDPKLEDLPPEERDLRTVFCMQLSQRIRAKDLEEFFSSVG 722
K + E E Q+E + G+ + L F + S+ I+ EE +
Sbjct: 87 KYGRKEEGESQEESKRSPWGIWVGNLSFHTTKEILTDFFVRETSEMIKEVS-EENIKPIT 145
Query: 723 KVRDVRL-ITCNKTRRF--KGIAYIEFKDAESVPLALGLTGQKLLGVPIIVQHT---QAE 884
+ R+ + +K +RF KG AY++F +++ LAL + + L G I+++
Sbjct: 146 TEQITRIHMPMSKEKRFQNKGFAYVDFATEDALKLALQCSEKALNGRNILIKSNTDFSGR 205
Query: 885 KNRVGNTLPNLA 920
++ NTL A
Sbjct: 206 PSKPANTLSKTA 217
>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 414
Score = 28.3 bits (60), Expect = 2.3
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +3
Query: 537 FIKKKKTPEREPQKEYRSKSRGLDPKLEDLPPEERDLRTVFCMQLSQRIRAKDLEEFFSS 716
F + KK ER + E + R LD +ED E D+ C S+ I A + EF+
Sbjct: 193 FDEIKKAYERRLE-EVEKQLRSLDEGMEDYLSLETDVLAPLCSDSSKAIYAYNTPEFWRQ 251
Query: 717 V 719
+
Sbjct: 252 I 252
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 27.5 bits (58), Expect = 4.0
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +3
Query: 453 EKENEIKKNVVAATRTEVGKEIAVAIKTFIKKKKTPEREPQKEYRS--KSRGLDPKLEDL 626
E+E+E + N A+ E+ + A A K +KKK+T + Q+E S K+ K+E
Sbjct: 157 EEESESEDNS-ASEEDEL--DSAPAKKAQVKKKRTKDESEQEEAASPKKNNTKKQKVEGT 213
Query: 627 PPEERDLRTVFCMQLSQ 677
P +E+ + F +L Q
Sbjct: 214 PVKEK--KVAFAEKLEQ 228
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 27.5 bits (58), Expect = 4.0
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +3
Query: 648 RTVFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAESV 812
R VF L K++EE F GK+ +++++ K F + ++ +DA V
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILS-KKNIAF--VHFLNIRDAIKV 350
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 27.1 bits (57), Expect = 5.3
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Frame = +3
Query: 549 KKTPEREPQKEYRSKSRGLDPKLEDLPPEERDLRTVFCMQLSQRIRAKD--LEEFFS-SV 719
+K+PE E K R + P L + + R+V+C LE+FF +
Sbjct: 122 RKSPELLEVDEAGEKVRRMIP-LVRVDNKSVMERSVYCKGFGDEKDDTQIALEKFFEENA 180
Query: 720 GKVRDVRLITCNKTRRFKGIAYIEFKDAE 806
G + VR+ + ++FKG ++EFK+ +
Sbjct: 181 GPISAVRMRR-DDDKKFKGSVFVEFKEPD 208
>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 584
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 888 FFRLACAVQL*ELQVTFVLLSQEPKALIQHL 796
+F+L C++ E++V F SQ A ++HL
Sbjct: 71 YFKLLCSIGFKEIEVGFPSASQTDFAFVRHL 101
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 26.2 bits (55), Expect = 9.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 676 KESVLKI*KNFSHQLARFET*DLLLAIKQEDSKVLHILNSKMLN 807
K+ +LK SH+ + E +LA+ Q D L+ LN+ L+
Sbjct: 684 KQGILKFQSKESHKFRKKEVWSTVLAVLQRDVFTLYNLNTPNLS 727
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 26.2 bits (55), Expect = 9.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 690 KDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAE 806
K + +FS G V +R+ KT K A+IEF+ +
Sbjct: 119 KQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLD 157
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,371,102
Number of Sequences: 5004
Number of extensions: 59184
Number of successful extensions: 198
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 661404424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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