Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_L05
(1221 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 119 4e-27
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 118 8e-27
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 48 2e-05
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 42 9e-04
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 42 0.001
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 42 0.001
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 40 0.003
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 40 0.004
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 40 0.004
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 37 0.025
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 37 0.025
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 37 0.025
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 35 0.10
Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical pr... 35 0.13
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 35 0.13
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 35 0.13
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 35 0.13
AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer... 34 0.18
AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer ... 34 0.18
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 33 0.31
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 33 0.31
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 32 0.95
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 32 0.95
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 32 0.95
AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical... 32 0.95
AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical... 31 1.3
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 31 1.7
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 31 1.7
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 31 1.7
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 31 1.7
Z81070-2|CAB03007.1| 491|Caenorhabditis elegans Hypothetical pr... 31 2.2
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 31 2.2
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 30 2.9
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 29 5.0
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 29 5.0
AC024771-1|AAK70658.2| 315|Caenorhabditis elegans Serpentine re... 29 5.0
Z46829-1|CAA86862.1| 375|Caenorhabditis elegans Hypothetical pr... 29 6.7
U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin pr... 29 6.7
AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical... 29 6.7
AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical... 29 6.7
AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical ... 29 8.8
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 119 bits (287), Expect = 4e-27
Identities = 69/139 (49%), Positives = 90/139 (64%), Gaps = 6/139 (4%)
Frame = +3
Query: 558 PEREPQKEYRSK-SRGLDPKLEDLPPEERDLRTVFCMQLSQRIRAKDLEEFFSSVGKVRD 734
PER + + S + KLE L EERD RT+ MQ+++ R +DLEEFFS+VG VRD
Sbjct: 140 PERRDVMPFNPRHSPPKNAKLE-LTAEERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRD 198
Query: 735 VRLITCNKTRRFKGIAYIEFKDAESVPLALGLTGQKLLGVPIIVQHTQAEKNRVGN---- 902
VR+IT ++T R KGI Y+EF D ESVPL L L GQ+L+G P+ +Q T AE+NR N
Sbjct: 199 VRIITDSRTGRSKGICYVEFWDEESVPLGLALNGQRLMGAPLQIQRTCAERNRAANSSVA 258
Query: 903 -TLPNLAPKTSNGPTRLYV 956
TL +AP + GPT + V
Sbjct: 259 STLGFVAP-GNKGPTHVLV 276
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 118 bits (284), Expect = 8e-27
Identities = 65/120 (54%), Positives = 83/120 (69%), Gaps = 5/120 (4%)
Frame = +3
Query: 612 KLEDLPPEERDLRTVFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIE 791
KLE L EERD RT+ MQ+++ R +DLEEFFS+VG VRDVR+IT ++T R KGI Y+E
Sbjct: 14 KLE-LTAEERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVE 72
Query: 792 FKDAESVPLALGLTGQKLLGVPIIVQHTQAEKNRVGN-----TLPNLAPKTSNGPTRLYV 956
F D ESVPL L L GQ+L+G P+ +Q T AE+NR N TL +AP + GPT + V
Sbjct: 73 FWDEESVPLGLALNGQRLMGAPLQIQRTCAERNRAANSSVASTLGFVAP-GNKGPTHVLV 131
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 47.6 bits (108), Expect = 2e-05
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Frame = +3
Query: 561 EREPQKEYRSKSRG-LDPKLEDLPPEERDLRTVFCMQLSQRIRAKDLEEFFSSVGKVRDV 737
E E K+ S S+ + P E+ E+ D R+V+ + + ++EE F+ GKV V
Sbjct: 18 EMELLKQALSASKKYMAPTAEE--QEKTDARSVYVGNVDWKSTVSEIEEHFAVCGKVARV 75
Query: 738 RLITCNKTRRFKGIAYIEFKDAESVPLALGLTGQKLLGVPIIVQHTQAEKNRVGNTLPNL 917
+ T K A++EF+ ESV LAL L+G I+V + K +G T
Sbjct: 76 TIPKDKFTGYQKNFAFVEFQKLESVQLALVLSGTMFRNRKIMVTLKRTNKPGMGRTATAQ 135
Query: 918 AP----KTSNGPTRLYVGSXIL 971
P K+S+G + G ++
Sbjct: 136 KPAHFAKSSHGKPGSHQGVTVV 157
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 41.9 bits (94), Expect = 9e-04
Identities = 22/75 (29%), Positives = 37/75 (49%)
Frame = +3
Query: 642 DLRTVFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAESVPLA 821
D ++VF + +++EE F G++ + T++ K AYIEF D+ S+ A
Sbjct: 53 DAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENA 112
Query: 822 LGLTGQKLLGVPIIV 866
L + G PI+V
Sbjct: 113 LVMNGSLFRSRPIVV 127
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 41.5 bits (93), Expect = 0.001
Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 3/142 (2%)
Frame = +3
Query: 531 KTFIKKKKTPEREPQ--KEYRSKSRGLDPKLEDLPPEERDLRTVFCMQLSQRIRAKDLEE 704
K I+K +TPE E + +E+ + D + E + + + +F L + DL+
Sbjct: 238 KIGIEKIETPEPEHEVIEEHGASLESRDKEEETVREKILETGRLFLRNLPYATKEDDLQF 297
Query: 705 FFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAESVPLAL-GLTGQKLLGVPIIVQHTQA 881
F G+V +V+++ KT KG A +EF E+ A L G G + +
Sbjct: 298 LFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSALDGYVFKGRMMHILPGDE 357
Query: 882 EKNRVGNTLPNLAPKTSNGPTR 947
++ + G + P + P +
Sbjct: 358 KRTKEGEEESEVVPDDPDNPLK 379
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 41.5 bits (93), Expect = 0.001
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Frame = +3
Query: 690 KDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAESVPLAL-GLTGQKLLGVPIIV 866
++L FFSS+G++ +VR++ +T R +G A+IEF + S A+ + G + G P+ V
Sbjct: 19 EELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRV 78
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 40.3 bits (90), Expect = 0.003
Identities = 22/75 (29%), Positives = 36/75 (48%)
Frame = +3
Query: 642 DLRTVFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAESVPLA 821
D ++VF + +++EE F G + + T++ K AYIEF D+ S+ A
Sbjct: 59 DAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENA 118
Query: 822 LGLTGQKLLGVPIIV 866
L + G PI+V
Sbjct: 119 LVMNGSLFRSRPIVV 133
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 39.9 bits (89), Expect = 0.004
Identities = 20/82 (24%), Positives = 39/82 (47%)
Frame = +3
Query: 648 RTVFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAESVPLALG 827
+ +F +S + +DL F+ G+V ++ R +G A++EF E LAL
Sbjct: 29 KKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALA 88
Query: 828 LTGQKLLGVPIIVQHTQAEKNR 893
Q + G + V+ ++ +N+
Sbjct: 89 AREQTIKGKSVEVKPAKSRENK 110
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 39.9 bits (89), Expect = 0.004
Identities = 20/82 (24%), Positives = 39/82 (47%)
Frame = +3
Query: 648 RTVFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAESVPLALG 827
+ +F +S + +DL F+ G+V ++ R +G A++EF E LAL
Sbjct: 29 KKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALA 88
Query: 828 LTGQKLLGVPIIVQHTQAEKNR 893
Q + G + V+ ++ +N+
Sbjct: 89 AREQTIKGKSVEVKPAKSRENK 110
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 37.1 bits (82), Expect = 0.025
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +3
Query: 654 VFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAESVPLAL-GL 830
++ +L+ R+ KD+E FF G++RDV L G ++EF D A+ L
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLL--------KNGFGFVEFDDKRDAEDAVHDL 56
Query: 831 TGQKLLGVPIIVQHTQ 878
G++L G +I+ +++
Sbjct: 57 NGKELGGERVILDYSK 72
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 37.1 bits (82), Expect = 0.025
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +3
Query: 654 VFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAESVPLAL-GL 830
++ +L+ R+ KD+E FF G++RDV L G ++EF D A+ L
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLL--------KNGFGFVEFDDKRDAEDAVHDL 56
Query: 831 TGQKLLGVPIIVQHTQ 878
G++L G +I+ +++
Sbjct: 57 NGKELGGERVILDYSK 72
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 37.1 bits (82), Expect = 0.025
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +3
Query: 654 VFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAESVPLAL-GL 830
++ +L+ R+ KD+E FF G++RDV L G ++EF D A+ L
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLL--------KNGFGFVEFDDKRDAEDAVHDL 56
Query: 831 TGQKLLGVPIIVQHTQ 878
G++L G +I+ +++
Sbjct: 57 NGKELGGERVILDYSK 72
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 35.1 bits (77), Expect = 0.10
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 693 DLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAESVPLAL 824
DL +FS G V +VR++ +T R +G A++EF + + A+
Sbjct: 19 DLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAV 62
>Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical
protein T11G6.8 protein.
Length = 408
Score = 34.7 bits (76), Expect = 0.13
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +3
Query: 627 PPEERDLRTVFCMQL----SQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEF 794
PP + + T++ L +Q++ KDL +FF G +R +R++T KG A+IEF
Sbjct: 228 PPADTTITTLYIGNLGPSGAQQVTEKDLNDFFYQYGDIRCLRVLT------EKGCAFIEF 281
Query: 795 KDAESVPLA 821
E+ A
Sbjct: 282 TTREAAERA 290
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 34.7 bits (76), Expect = 0.13
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +3
Query: 621 DLPPEERDLRTVFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 800
D E +LR +F L+ + EF+S G++ D+ ++ T+R +G ++ F
Sbjct: 14 DASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSG 73
Query: 801 AESVPLAL 824
V A+
Sbjct: 74 KTEVDAAM 81
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 34.7 bits (76), Expect = 0.13
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +3
Query: 621 DLPPEERDLRTVFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 800
D E +LR +F L+ + EF+S G++ D+ ++ T+R +G ++ F
Sbjct: 14 DASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSG 73
Query: 801 AESVPLAL 824
V A+
Sbjct: 74 KTEVDAAM 81
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 34.7 bits (76), Expect = 0.13
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +3
Query: 621 DLPPEERDLRTVFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKD 800
D E +LR +F L+ + EF+S G++ D+ ++ T+R +G ++ F
Sbjct: 14 DASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSG 73
Query: 801 AESVPLAL 824
V A+
Sbjct: 74 KTEVDAAM 81
>AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 2, isoform b protein.
Length = 1051
Score = 34.3 bits (75), Expect = 0.18
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 329 FFYLSIDYAFLNHLYPFLCAYLSACPIDALMRKCYPIYY 213
FFY + + N Y F C Y + DA++ CY +++
Sbjct: 653 FFYKNFAFTLTNFWYSFFCGYSAQTVFDAVLIACYNLFF 691
>AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 2, isoform a protein.
Length = 1222
Score = 34.3 bits (75), Expect = 0.18
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 329 FFYLSIDYAFLNHLYPFLCAYLSACPIDALMRKCYPIYY 213
FFY + + N Y F C Y + DA++ CY +++
Sbjct: 824 FFYKNFAFTLTNFWYSFFCGYSAQTVFDAVLIACYNLFF 862
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 33.5 bits (73), Expect = 0.31
Identities = 19/81 (23%), Positives = 35/81 (43%)
Frame = +3
Query: 567 EPQKEYRSKSRGLDPKLEDLPPEERDLRTVFCMQLSQRIRAKDLEEFFSSVGKVRDVRLI 746
+ Q E R+ S P ++ D +F Q+ + + KDL F GK+ + ++
Sbjct: 3 QQQHEMRASSTSSTDS-NGFPVKDPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTIL 61
Query: 747 TCNKTRRFKGIAYIEFKDAES 809
T KG A++ + +S
Sbjct: 62 KDKYTGMHKGCAFLTYCHRDS 82
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 33.5 bits (73), Expect = 0.31
Identities = 19/81 (23%), Positives = 35/81 (43%)
Frame = +3
Query: 567 EPQKEYRSKSRGLDPKLEDLPPEERDLRTVFCMQLSQRIRAKDLEEFFSSVGKVRDVRLI 746
+ Q E R+ S P ++ D +F Q+ + + KDL F GK+ + ++
Sbjct: 3 QQQHEMRASSTSSTDS-NGFPVKDPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTIL 61
Query: 747 TCNKTRRFKGIAYIEFKDAES 809
T KG A++ + +S
Sbjct: 62 KDKYTGMHKGCAFLTYCHRDS 82
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 31.9 bits (69), Expect = 0.95
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +3
Query: 618 EDLPPEERDLRTVFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 797
+++PPE +F +L+ +DLE FS GK+ + ++ ++ A+IEF
Sbjct: 235 DEVPPEN----VLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFD 290
Query: 798 DAES 809
+A+S
Sbjct: 291 NAKS 294
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 31.9 bits (69), Expect = 0.95
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +3
Query: 618 EDLPPEERDLRTVFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 797
+++PPE +F +L+ +DLE FS GK+ + ++ ++ A+IEF
Sbjct: 235 DEVPPEN----VLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFD 290
Query: 798 DAES 809
+A+S
Sbjct: 291 NAKS 294
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 31.9 bits (69), Expect = 0.95
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +3
Query: 618 EDLPPEERDLRTVFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFK 797
+++PPE +F +L+ +DLE FS GK+ + ++ ++ A+IEF
Sbjct: 166 DEVPPEN----VLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFD 221
Query: 798 DAES 809
+A+S
Sbjct: 222 NAKS 225
>AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical
protein Y37D8A.21 protein.
Length = 282
Score = 31.9 bits (69), Expect = 0.95
Identities = 23/68 (33%), Positives = 34/68 (50%)
Frame = +3
Query: 627 PPEERDLRTVFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAE 806
PPEER T++ S+ + + LEE F G V V++I + A +EF+D
Sbjct: 9 PPEER---TIYVANFSEEVDEELLEELFIQAGPV--VKVILRDVRDSNAKFALVEFEDEL 63
Query: 807 SVPLALGL 830
SV A+ L
Sbjct: 64 SVLFAIEL 71
>AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical
protein Y73B6BL.33 protein.
Length = 610
Score = 31.5 bits (68), Expect = 1.3
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Frame = +3
Query: 510 KEIAVAIKTFIKKKKTPEREPQKEYRSKSRGLDPKLED-LPPEERDLRTVFCMQLSQRIR 686
KE +A+KT P+ Q + + K+ PP + +R L
Sbjct: 21 KEEEIAVKTQSAPADAPDIH-QSTIKEADESMPTKISSGEPPRSQYIRL---RGLPFNAT 76
Query: 687 AKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAESVPLAL 824
KD+ EFF+ + + V+ + C T R G AY+EFK+ E A+
Sbjct: 77 EKDIHEFFAGL-TIERVKFV-CT-TGRPNGEAYVEFKNTEEAGKAM 119
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 31.1 bits (67), Expect = 1.7
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = +3
Query: 654 VFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAESVPLAL-GL 830
+F L + ++E S G ++ L + KG A+ E+ D A+ GL
Sbjct: 293 IFIGGLPNYLTEDQVKELLCSFGPLKAFSL-NVDSQGNSKGYAFAEYLDPTLTDQAIAGL 351
Query: 831 TGQKLLGVPIIVQHTQAEKNRVGNTLPNLA 920
G +L ++VQ A + R LPN A
Sbjct: 352 NGMQLGDKQLVVQLACANQQRHNTNLPNSA 381
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 31.1 bits (67), Expect = 1.7
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = +3
Query: 654 VFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAESVPLAL-GL 830
+F L + ++E S G ++ L + KG A+ E+ D A+ GL
Sbjct: 293 IFIGGLPNYLTEDQVKELLCSFGPLKAFSL-NVDSQGNSKGYAFAEYLDPTLTDQAIAGL 351
Query: 831 TGQKLLGVPIIVQHTQAEKNRVGNTLPNLA 920
G +L ++VQ A + R LPN A
Sbjct: 352 NGMQLGDKQLVVQLACANQQRHNTNLPNSA 381
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 31.1 bits (67), Expect = 1.7
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = +3
Query: 654 VFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAESVPLAL-GL 830
+F L + ++E S G ++ L + KG A+ E+ D A+ GL
Sbjct: 268 IFIGGLPNYLTEDQVKELLCSFGPLKAFSL-NVDSQGNSKGYAFAEYLDPTLTDQAIAGL 326
Query: 831 TGQKLLGVPIIVQHTQAEKNRVGNTLPNLA 920
G +L ++VQ A + R LPN A
Sbjct: 327 NGMQLGDKQLVVQLACANQQRHNTNLPNSA 356
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 31.1 bits (67), Expect = 1.7
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = +3
Query: 654 VFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAESVPLAL-GL 830
+F L + ++E S G ++ L + KG A+ E+ D A+ GL
Sbjct: 271 IFIGGLPNYLTEDQVKELLCSFGPLKAFSL-NVDSQGNSKGYAFAEYLDPTLTDQAIAGL 329
Query: 831 TGQKLLGVPIIVQHTQAEKNRVGNTLPNLA 920
G +L ++VQ A + R LPN A
Sbjct: 330 NGMQLGDKQLVVQLACANQQRHNTNLPNSA 359
>Z81070-2|CAB03007.1| 491|Caenorhabditis elegans Hypothetical
protein F26E4.3 protein.
Length = 491
Score = 30.7 bits (66), Expect = 2.2
Identities = 22/73 (30%), Positives = 32/73 (43%)
Frame = +3
Query: 546 KKKTPEREPQKEYRSKSRGLDPKLEDLPPEERDLRTVFCMQLSQRIRAKDLEEFFSSVGK 725
KKK ++ K R++ RG K+ ++PP L V C+ + R FF G
Sbjct: 14 KKKKRKKTLLKRERNRKRGETVKITEMPPNSVFLLPVLCLIVPIYSRG-----FFGIPGD 68
Query: 726 VRDVRLITCNKTR 764
VR TC + R
Sbjct: 69 YCSVRTHTCCENR 81
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 30.7 bits (66), Expect = 2.2
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +3
Query: 654 VFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAESVPLAL-GL 830
V+ +L R +D+E FF GK+ DV I N G +++F+D A+ L
Sbjct: 4 VYIGRLPNRASDRDVEHFFRGYGKLSDV--IMKN------GFGFVDFQDQRDADDAVHDL 55
Query: 831 TGQKLLGVPIIVQ 869
G++L G +I++
Sbjct: 56 NGKELCGERVILE 68
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 30.3 bits (65), Expect = 2.9
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +3
Query: 648 RTVFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEF-KDAESVPLAL 824
+ +FC L A+ LE F+ ++D+R++ N+ GIA++EF D+ ++P
Sbjct: 132 KILFCTNLPDSATAEMLEIMFNQFAGLKDIRMVP-NR----PGIAFVEFDTDSLAIPART 186
Query: 825 GLTGQKL 845
L K+
Sbjct: 187 TLNNFKI 193
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 29.5 bits (63), Expect = 5.0
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +3
Query: 696 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAESVPLAL 824
+ EF+S G++ D+ ++ T+R +G ++ F V A+
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAM 43
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 29.5 bits (63), Expect = 5.0
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +3
Query: 696 LEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAESVPLAL 824
+ EF+S G++ D+ ++ T+R +G ++ F V A+
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAM 43
>AC024771-1|AAK70658.2| 315|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 23 protein.
Length = 315
Score = 29.5 bits (63), Expect = 5.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 583 YSFCGSLSGVFFFFMNVFIATAISF 509
Y +CG GV F+ +F+AT F
Sbjct: 139 YEYCGQFFGVLLVFLQIFLATCYLF 163
>Z46829-1|CAA86862.1| 375|Caenorhabditis elegans Hypothetical
protein T14B1.1 protein.
Length = 375
Score = 29.1 bits (62), Expect = 6.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 561 EREPQKEYRSKSRGLDPKLEDLPPEERDLRTVFCMQLSQRIR 686
E+EP + S+ + P ED PE + T C Q+++ +R
Sbjct: 37 EKEPNADLSSEEELVAPDAEDFVPEIDNEATAHCYQVAEAMR 78
>U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin
protein 2, isoform b protein.
Length = 639
Score = 29.1 bits (62), Expect = 6.7
Identities = 22/72 (30%), Positives = 38/72 (52%)
Frame = +3
Query: 441 KTAREKENEIKKNVVAATRTEVGKEIAVAIKTFIKKKKTPEREPQKEYRSKSRGLDPKLE 620
+ +RE E + + V E K++A+ KTF+KK++TP QK + +R +PK +
Sbjct: 329 RASRESEEDTEF-VPPPAVPEPPKKLAIP-KTFMKKEETPSF--QKVAKRPTRQWEPKKQ 384
Query: 621 DLPPEERDLRTV 656
+ +E TV
Sbjct: 385 ESLEQEEHKETV 396
>AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical
protein W02D3.11b protein.
Length = 362
Score = 29.1 bits (62), Expect = 6.7
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +3
Query: 681 IRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAESVPLA 821
+ ++D+ +F + + VRD L+ + R G AY+ F+ ESV +A
Sbjct: 134 VTSRDISDFLAPLPIVRDGILLPDQQRARPGGEAYVCFETMESVQIA 180
>AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical
protein W02D3.11a protein.
Length = 549
Score = 29.1 bits (62), Expect = 6.7
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +3
Query: 681 IRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAESVPLA 821
+ ++D+ +F + + VRD L+ + R G AY+ F+ ESV +A
Sbjct: 134 VTSRDISDFLAPLPIVRDGILLPDQQRARPGGEAYVCFETMESVQIA 180
>AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical
protein T01A4.1a protein.
Length = 1217
Score = 28.7 bits (61), Expect = 8.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 444 TAREKENEIKKNVVAATRTEVGKEIAVAIKTFIKKKKTPEREPQK 578
T+R N K++ + T ++ I + F +KK TP E QK
Sbjct: 546 TSRSSVNSDKRSSSSGTTRKISAMIDRKLSIFTRKKSTPPSESQK 590
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,388,239
Number of Sequences: 27780
Number of extensions: 327218
Number of successful extensions: 1091
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3370329934
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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