Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_L03
         (1233 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    31   0.43 
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    28   2.3  

>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 30.7 bits (66), Expect = 0.43
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 626 QASTSTPEEKEEKPDVPTLMQQMRDTGLIMKPGALP-LTAAKVEDNDSTNLTEHD 787
           +A TS   +K  K ++   +++ R T   ++  A+  L  AK E  DSTNLT  +
Sbjct: 436 EACTSRESQKTRKKNLKENIRKQRTTSTAIRDIAIKFLDDAKCETEDSTNLTNRE 490


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 302 LXXIVSAMLLVFAWMQLFAVLPXRPFXNWRLKRDGR 195
           L  I+  +L +F    + AV+P  PF  W L  + R
Sbjct: 224 LIFIICGVLAIFLGFVILAVVPDNPFKAWFLTEEDR 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,608,621
Number of Sequences: 5004
Number of extensions: 38942
Number of successful extensions: 125
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 669373152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)