Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_L02
         (1246 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...   107   4e-24
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    30   0.77 

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score =  107 bits (256), Expect = 4e-24
 Identities = 48/90 (53%), Positives = 71/90 (78%)
 Frame = +3

Query: 192 PXSKELSQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANG 371
           P SKEL +++ ++S+P+R+DD++ V+RG  KG++ GK+  VYRKKF++ IER+ REKANG
Sbjct: 33  PLSKELREQYKIRSLPVRRDDQITVIRGSNKGRE-GKITSVYRKKFLLLIERVTREKANG 91

Query: 372 ATAYVGIHPSKCVIVKLKMNKDRKAILDRR 461
           A+A VGI  SK VI KL ++KDRK ++ R+
Sbjct: 92  ASAPVGIDASKVVITKLHLDKDRKDLIVRK 121



 Score = 35.9 bits (79), Expect = 0.012
 Identities = 20/42 (47%), Positives = 26/42 (61%)
 Frame = +2

Query: 128 RQNRXRHFSAPSHLRRVLMSSPLX*GTKPKIQCKIHAYSQRR 253
           R+ R  HF APS +RRVLMS+PL    + + Q KI +   RR
Sbjct: 12  RKQRKAHFGAPSSVRRVLMSAPL--SKELREQYKIRSLPVRR 51


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -3

Query: 383 ICCCTIGLFSLNPLNVYNKLFTIHLHHFA---NLLTFVVSTYNLNFIVFANRH 234
           + C +I LFS  PL+  N+ F I+L  F+    L   ++ST  + F  F  RH
Sbjct: 825 LTCISIPLFSFEPLSKKNR-FLINLFRFSFSFILYNLLISTSTVFFAGFFRRH 876


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,108,188
Number of Sequences: 5004
Number of extensions: 42380
Number of successful extensions: 121
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 677341880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)