Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_L02
         (1246 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0263 + 2136858-2137331                                          142   4e-34
12_01_0323 - 2459854-2460306                                          141   9e-34
11_01_0317 - 2365493-2365786,2365825-2365953                          108   1e-23

>01_01_0263 + 2136858-2137331
          Length = 157

 Score =  142 bits (345), Expect = 4e-34
 Identities = 68/103 (66%), Positives = 87/103 (84%)
 Frame = +3

Query: 198 SKELSQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGAT 377
           S EL  K+NV+S+PIRKDDEVQVVRG YKG++ GKV+QVYR+++V+++ERI REK NG+T
Sbjct: 35  SSELRHKYNVRSIPIRKDDEVQVVRGSYKGRE-GKVVQVYRRRWVIHVERITREKVNGST 93

Query: 378 AYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 506
             VGIHPSK V+ KLK++KDRKAILDR+A+GR  A  K KGK+
Sbjct: 94  VNVGIHPSKVVVTKLKLDKDRKAILDRKARGR--AADKAKGKF 134



 Score = 31.1 bits (67), Expect = 1.9
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +2

Query: 128 RQNRXRHFSAPSHLRRVLMSSPL 196
           R+ R  HF+APS +RRVLMS+ L
Sbjct: 12  RKCRKAHFTAPSSVRRVLMSAAL 34


>12_01_0323 - 2459854-2460306
          Length = 150

 Score =  141 bits (342), Expect = 9e-34
 Identities = 68/103 (66%), Positives = 86/103 (83%)
 Frame = +3

Query: 198 SKELSQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGAT 377
           S EL  K+NV+S+PIRKDDEVQVVRG YKG++ GKV+QVYR+++V+++ERI REK NG+T
Sbjct: 35  STELRHKYNVRSIPIRKDDEVQVVRGSYKGRE-GKVVQVYRRRWVIHVERITREKVNGST 93

Query: 378 AYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 506
             VGIHPSK V+ KLK++KDRKAILDR+A GR  A  K KGK+
Sbjct: 94  VNVGIHPSKVVVTKLKLDKDRKAILDRKASGR--AADKAKGKF 134



 Score = 31.1 bits (67), Expect = 1.9
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +2

Query: 128 RQNRXRHFSAPSHLRRVLMSSPL 196
           R+ R  HF+APS +RRVLMS+ L
Sbjct: 12  RKCRKAHFTAPSSVRRVLMSAAL 34


>11_01_0317 - 2365493-2365786,2365825-2365953
          Length = 140

 Score =  108 bits (259), Expect = 1e-23
 Identities = 52/81 (64%), Positives = 67/81 (82%)
 Frame = +3

Query: 264 VVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRK 443
           VVRG YKG++ GKV+QVYR+++V+++ERI REK NG+T  VGIHPSK V+ KLK++KDRK
Sbjct: 44  VVRGSYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRK 102

Query: 444 AILDRRAKGRLAALGKDKGKY 506
           AILDR+A GR  A  K KGK+
Sbjct: 103 AILDRKASGR--AADKAKGKF 121



 Score = 31.1 bits (67), Expect = 1.9
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +2

Query: 128 RQNRXRHFSAPSHLRRVLMSSPL 196
           R+ R  HF+APS +RRVLMS+ L
Sbjct: 12  RKCRKAHFTAPSSVRRVLMSAAL 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,980,390
Number of Sequences: 37544
Number of extensions: 292274
Number of successful extensions: 754
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3841085160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)