Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_L02
         (1246 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)             155   5e-38
SB_15946| Best HMM Match : Extensin_2 (HMM E-Value=1)                  29   7.7  

>SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score =  155 bits (377), Expect = 5e-38
 Identities = 72/100 (72%), Positives = 87/100 (87%)
 Frame = +3

Query: 192 PXSKELSQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANG 371
           P SKEL QK+NV+S+P+RKDDEVQV RGH+K QQVGKV+QVYRKK+V++I+RIQREKANG
Sbjct: 33  PLSKELRQKYNVRSIPVRKDDEVQVTRGHFKSQQVGKVIQVYRKKWVIHIDRIQREKANG 92

Query: 372 ATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGK 491
           AT  VGIHPSK  IVKLK++KDRK ILDR+ + +LA  GK
Sbjct: 93  ATVSVGIHPSKVEIVKLKIDKDRKKILDRKNRSKLAEKGK 132



 Score = 34.7 bits (76), Expect = 0.16
 Identities = 15/23 (65%), Positives = 19/23 (82%)
 Frame = +2

Query: 128 RQNRXRHFSAPSHLRRVLMSSPL 196
           R++R  HFSAPS +RR LMS+PL
Sbjct: 12  RKSRKAHFSAPSSVRRKLMSAPL 34


>SB_15946| Best HMM Match : Extensin_2 (HMM E-Value=1)
          Length = 285

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 71  SFWXIAPACSSTSRCLPQVRQNRXRHFSAPSHLRRVLMSSP 193
           +F   A  C + +  +  +   R  H S PSH RRVL  SP
Sbjct: 17  TFPVTALTCKTCTFPVTALHARRVLHLSPPSHARRVLSLSP 57


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,338,883
Number of Sequences: 59808
Number of extensions: 338392
Number of successful extensions: 988
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 3893203050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)