Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_L01
         (1186 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|...    95   1e-20
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe...    52   1e-07
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar...    28   2.2  
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    28   2.2  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    27   3.9  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    27   5.1  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   8.9  

>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 95.5 bits (227), Expect = 1e-20
 Identities = 56/155 (36%), Positives = 85/155 (54%), Gaps = 3/155 (1%)
 Frame = +2

Query: 98  IKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKL 277
           + VG  LP   L+E+ P   V   E  +  K ++  VPGAFTP CS + +PGY+ N  + 
Sbjct: 2   VAVGSTLPKVTLWENKPEEVV---EFPSQGKFIIVGVPGAFTPPCS-SQVPGYIANEKQF 57

Query: 278 KSDGVAEIVCVSVNDPYVMAAWGAQHN--TKGKVRMLADPSGNFIKALDLGTNLPP-LGG 448
            + G++ I  V+VND +V  AW    +   +  V  +AD +G F KA D G +    LG 
Sbjct: 58  AAKGISGIYVVAVNDVFVTKAWKKSFDGGEQSGVHFVADWNGEFTKAFDAGFDASGLLGP 117

Query: 449 FRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKI 553
            RSKR++ V+ + KV  + +E + T +  S ADK+
Sbjct: 118 LRSKRYAAVVENGKVVKVFIENEVTDVDISSADKV 152


>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 195

 Score = 52.4 bits (120), Expect = 1e-07
 Identities = 34/106 (32%), Positives = 55/106 (51%)
 Frame = +2

Query: 98  IKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKL 277
           I+VGD +P   L  D     + + ++TA K +V+FA P A TPGC+K    G+  N  K+
Sbjct: 46  IQVGDVIPDITL-PDEDGTSIRLRDITANKGLVIFAYPKASTPGCTKQGC-GFRDNYPKI 103

Query: 278 KSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKAL 415
           ++    E++ +S +      A+  + N      +L+DP G  IK L
Sbjct: 104 QASDY-EVLGLSFDTSKAQKAFKDKQNF--PYHLLSDPKGELIKKL 146


>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 413

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 775 QISRQFSWHFDCALVTFNTAFASIYLGS*TPREKDKLR 662
           Q++R + WH D AL  +N    +  L    P+    LR
Sbjct: 175 QVTRFYRWHIDAALYDYNPPVVTTLLAVNAPQGTQTLR 212


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +2

Query: 152 NKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVA--EIVCVSVND 322
           NK  + EL    KV++      +   C K   P Y   AD+L+ DG++  E+ C    D
Sbjct: 28  NKEGLNELITADKVLMVKFYAPWCGHC-KALAPEYESAADELEKDGISLVEVDCTEEGD 85


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = +2

Query: 23  IP*XFDSPNRASARALHISQLSMAPIKVGDQLPAAD--LFEDSPANKVNICELTAGKKVV 196
           +P  FD P R +A + ++  LS+ P +      A D  L   S A+++    +T+   V 
Sbjct: 231 VPPKFDQPERDAATSEYLESLSIKPFEYSGSDDATDVLLVFGSAASELAKAAVTSSVAVA 290

Query: 197 LFAVPGAFTPGCSKTHLP 250
           +  V   + P   +  LP
Sbjct: 291 IVRVLRPWLPSKLQEVLP 308


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 304 HYFSNSIRFQFICVLYVSRQVCFRTSRGEG 215
           H+   S+RF+ +  LY    VC  TS  +G
Sbjct: 365 HFLHKSVRFEELVALYNVSDVCLITSTRDG 394


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
 Frame = -3

Query: 1070 GXXXXFFFLIXSYMNNEDIILKLF-ILTKT*PEILIMHSKMLL-----YIFEVYSYINSQ 909
            G    F  L+ S   N     K++ + ++  PE+  + S M+      YIF V+ Y  S 
Sbjct: 497  GIITAFTLLLASLCKNTTSASKIYELFSEPIPEVGHLESLMITSPSWSYIFNVFRYYISH 556

Query: 908  XKRSQTILFKS 876
             K  QT++  S
Sbjct: 557  LKPVQTVVTSS 567


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,290,156
Number of Sequences: 5004
Number of extensions: 88462
Number of successful extensions: 211
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 637498240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)