Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_K24
         (1179 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1008 - 7987936-7988628,7988923-7989102                           35   0.14 
12_02_1188 + 26801833-26802225                                         30   4.1  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   9.4  
01_03_0308 - 14883728-14884120                                         29   9.4  

>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 34.7 bits (76), Expect = 0.14
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 839 RHASRREKGGQVSGKRQGRNRRAHEGAXQGETPG 738
           R   RR  GG+V+G+   R+RR   GA +GE  G
Sbjct: 241 RRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274


>12_02_1188 + 26801833-26802225
          Length = 130

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 815 GGQVSGKRQGRNRRAHEGAXQGETPGIFIVLSG 717
           GG  SGKR      AHEG  +G  P +++V  G
Sbjct: 33  GGGSSGKRSSSAAAAHEGVPEGHVP-VYVVGEG 64


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +3

Query: 474 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--EXTCEQKASKRPXTV 629
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>01_03_0308 - 14883728-14884120
          Length = 130

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +1

Query: 721 DRTIKIPGVSPXKAPSCALLFRP---CRLPDTCPPFSLREAWR 840
           +R  +I G    + PS A L+R    C    +CPP    E WR
Sbjct: 65  ERAPEIGGAVAGRKPSLAELWRRHRRCSCNSSCPPIEREERWR 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,469,755
Number of Sequences: 37544
Number of extensions: 437827
Number of successful extensions: 1045
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3608253564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)