Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_K21
         (1153 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   2.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   6.5  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.6 bits (51), Expect(2) = 2.1
 Identities = 12/29 (41%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
 Frame = -2

Query: 960 PXXQPPX---PXXXRXIXXXKPPPPPPXP 883
           P  QPP    P          PPPPPP P
Sbjct: 169 PSFQPPSAAAPATSLPSDYNPPPPPPPPP 197



 Score = 21.8 bits (44), Expect(2) = 2.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 906 PPPPPPXPXT 877
           P PPPP P T
Sbjct: 236 PAPPPPPPPT 245


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 948 PPXPXXXRXIXXXKPPPPPPXP 883
           PP P     +    PPPPPP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.1 bits (57), Expect = 4.9
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 948 PPXPXXXRXIXXXKPPPPPPXP 883
           PP P          PPPPPP P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = -2

Query: 960 PXXQPPXPXXXRXIXXXKPPPPPPXP 883
           P   PP P           PPPPP P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,881
Number of Sequences: 5004
Number of extensions: 36094
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 615584238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)