Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_K21
         (1153 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   0.37 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   6.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   6.7  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   6.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   8.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect(2) = 0.37
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 909  KPPPPPPXP 883
            +PPPPPP P
Sbjct: 1354 QPPPPPPPP 1362



 Score = 21.0 bits (42), Expect(2) = 0.37
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -2

Query: 903  PPPPPXPXTXNXSH 862
            PPPPP P +   ++
Sbjct: 1355 PPPPPPPPSSGQAY 1368


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -1

Query: 607 LYFNKLKNIVIYVFTNADDIFER 539
           +Y   ++   + ++ NADD F+R
Sbjct: 200 VYIADVEGYALIIYNNADDSFQR 222


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 909  KPPPPPPXPXTXNXS 865
            +PPPPPP     N S
Sbjct: 1858 EPPPPPPRNHDQNNS 1872


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 610 LLYFNKLKNIVIYVFTNADDIFER 539
           L+Y    K   + V+ NADD F R
Sbjct: 200 LVYMADHKGDALIVYQNADDSFHR 223


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 909 KPPPPPPXP 883
           KP PPPP P
Sbjct: 340 KPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,600
Number of Sequences: 438
Number of extensions: 3398
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 39042324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)