Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_K17
         (1193 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    29   0.96 
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    29   1.7  
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch...    27   5.1  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    27   6.8  

>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 29.5 bits (63), Expect = 0.96
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 246 MSKLKSQNRQFYEQPAC*VS*KKVLQFIVGKFTKRRN*AA-KHRQLHTKWR 97
           +S LK +N++F +  A  +   + L   +GK  K+ N    KH QL TKW+
Sbjct: 537 ISILKQRNQKFLKNNATSIQQIQYLDEELGKTLKQLNDLKEKHAQLQTKWK 587


>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = -1

Query: 674 SLWQHLAFVHLKRQSRFNICSAARHQRCCSDVVRPRSPLHRHNGIDLTAASAPPGT 507
           S+W      H++RQ  F +    R +    D++      H+H  I   AA   P T
Sbjct: 136 SVWPVSYRKHVQRQDVFTVHELKRIESILEDLINAAGASHKHGEIGCAAAIYDPTT 191


>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 272

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 689 YAGSYCKRTPAIKATRGPAGRSGLYRRDADPERRGDGRLLRRAV 820
           + G +  R   + ++ G  GRS +  RD+ P   G  R   R++
Sbjct: 86  HVGRWANRHSNVSSSSGSRGRSSVSSRDSSPSYSGALRSAERSI 129


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = -1

Query: 419 TLARTQTRTPQKLALHFVVSIRRHVSLSHNRK*AKSNNKDQPRAPITGHSQITNAQ 252
           ++A  Q    Q +  HF+    R+VSL        SNN    R P+T  S+I+N+Q
Sbjct: 118 SVAAAQAALNQDVGQHFIEEEERNVSL--------SNNSSGQRQPLT-ESKISNSQ 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,699,535
Number of Sequences: 5004
Number of extensions: 70902
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 643474786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)