Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_K17
         (1193 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical pr...   119   4e-27
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    29   8.6  

>U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical
           protein F49E10.5 protein.
          Length = 727

 Score =  119 bits (287), Expect = 4e-27
 Identities = 61/83 (73%), Positives = 66/83 (79%), Gaps = 2/83 (2%)
 Frame = +3

Query: 666 PKRARMD--SMRGPIANGPLQSRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTSEIHX 839
           P++A  D  SM     NGP  SRPLVALLDGRDC+VEMPILKDVATVAFCDAQST EIH 
Sbjct: 156 PQQALNDILSMTSTRMNGPSSSRPLVALLDGRDCSVEMPILKDVATVAFCDAQSTQEIHE 215

Query: 840 KVLNEXVGALMWHTIILTKEDLE 908
           KVLNE V ALM+H+I L KEDLE
Sbjct: 216 KVLNEAVAALMYHSIKLEKEDLE 238



 Score = 36.7 bits (81), Expect = 0.032
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +1

Query: 895  RRTLXKFKALRIIXRIGSGVXNIXVKXAGXLXIXXXNXP 1011
            +  L KFK L+++ RIG G+ NI VK A  L I   + P
Sbjct: 234  KEDLEKFKVLKVVFRIGYGIDNIDVKAATELGIAVCHAP 272


>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
           protein H43E16.1 protein.
          Length = 1203

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 20/49 (40%), Positives = 21/49 (42%)
 Frame = -1

Query: 533 TAASAPPGTARRTTLSPCH*HLNTHTRARASTSRDVVCTLARTQTRTPQ 387
           TA+SAP  TA  TT  P      T T    STS   V T     T T Q
Sbjct: 348 TASSAPASTAVVTTTMPVTTVQTTVTSIGTSTSPQAVVTTTGNPTTTAQ 396


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,228,366
Number of Sequences: 27780
Number of extensions: 429826
Number of successful extensions: 1021
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3276419812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)