Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_K15
(1233 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.020
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.19
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 22 1.9
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 3.1
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 24 3.7
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 23 7.3
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 9.3
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.1 bits (77), Expect = 0.020
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -3
Query: 412 PPPPPPXXLXXKPPPPPP 359
PPPPPP PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780
Score = 32.7 bits (71), Expect = 0.11
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3
Query: 412 PPPPPPXXLXXKPPPPPP 359
PPPPPP + PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPP 779
Score = 30.3 bits (65), Expect = 0.57
Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Frame = +3
Query: 432 APPPGXXGXTXXAPXPVP-PXXXPXPXXGGXGIXPXPPXRGG 554
+PPP P P P P P P GG P PP G
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAG 772
Score = 29.9 bits (64), Expect = 0.76
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 412 PPPPPPXXLXXKPPPPPP 359
P PPP + PPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPP 767
Score = 29.9 bits (64), Expect = 0.76
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 433 PPPRGXGGXLXXPPPPSPP 489
PPP G G PPPP PP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783
Score = 28.3 bits (60), Expect = 2.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3
Query: 409 PPPPPXXLXXKPPPPPP 359
PPP P PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPP 768
Score = 27.5 bits (58), Expect = 4.0
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -3
Query: 412 PPPPPPXXLXXKPPPPP 362
PPPPPP + P P P
Sbjct: 732 PPPPPPAVIVPTPAPAP 748
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.9 bits (69), Expect = 0.19
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -3
Query: 412 PPPPPPXXLXXKPPPPPP 359
PPPPPP PPPPP
Sbjct: 11 PPPPPPGFEPPSQPPPPP 28
Score = 31.9 bits (69), Expect = 0.19
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3
Query: 412 PPPPPPXXLXXKPPPPPP 359
PPPPP +PPPPPP
Sbjct: 12 PPPPPGFEPPSQPPPPPP 29
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 1.0
Identities = 17/70 (24%), Positives = 21/70 (30%)
Frame = +2
Query: 779 PPPPXXPXEXRXSPXXXPGGKXGPFXXTPPXXXXXXEPXXPPNRGXLXXXPXXPPXGXYX 958
PPPP S P G+ P P P + P PP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPG 397
Query: 959 KKSPXXPPPG 988
+ +P PP G
Sbjct: 398 RSAPALPPLG 407
Score = 29.1 bits (62), Expect = 1.3
Identities = 19/76 (25%), Positives = 24/76 (31%)
Frame = +3
Query: 783 PPXPPPGXXGNPPXLTXGEXRXXLXKPPPXCXXXXNPXXPQTGXXXXXPPVXPXXGNTXK 962
PP PPP + L + R PP P + PP P N
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAG 349
Query: 963 NPPXXPPPVKXKXXPP 1010
+ P PP + PP
Sbjct: 350 SIP-LPPQGRSAPPPP 364
Score = 27.1 bits (57), Expect = 5.3
Identities = 19/76 (25%), Positives = 20/76 (26%)
Frame = +2
Query: 785 PPXXPXEXRXSPXXXPGGKXGPFXXTPPXXXXXXEPXXPPNRGXLXXXPXXPPXGXYXKK 964
PP P R S K P PP +P P PP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAG 349
Query: 965 SPXXPPPG*XKXXXPP 1012
S PP G PP
Sbjct: 350 SIPLPPQGRSAPPPPP 365
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = -3
Query: 454 PXXPGGGAXXXXAYPPPPPPXXLXXKPPPPPP 359
P P A + P PPPP PP PP
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPP 1722
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = -2
Query: 461 SXPPXPRGGGXXXXXLSPPPPPXPXAXKTSPPSP 360
S PP P S PPPP P + S P+P
Sbjct: 1713 SVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 21.8 bits (44), Expect(3) = 1.9
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 412 PPPPPPXXL 386
PPPPPP L
Sbjct: 238 PPPPPPPTL 246
Score = 21.4 bits (43), Expect(3) = 1.9
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -3
Query: 418 AYPPPPPP 395
A PPPPPP
Sbjct: 237 APPPPPPP 244
Score = 21.4 bits (43), Expect(3) = 1.9
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = -3
Query: 403 PPPXXLXXKPPPPP 362
PPP +PP PP
Sbjct: 273 PPPPATPSQPPRPP 286
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.0 bits (52), Expect(2) = 3.1
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -3
Query: 412 PPPPPPXXLXXKPPPPP 362
PPPPPP L P P
Sbjct: 372 PPPPPPELLNHSPKSRP 388
Score = 21.0 bits (42), Expect(2) = 3.1
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = -3
Query: 418 AYPPPPPP 395
+Y PPPPP
Sbjct: 367 SYSPPPPP 374
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 23.8 bits (49), Expect(2) = 3.7
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = -3
Query: 418 AYPPPPPP 395
A+PPPPPP
Sbjct: 943 AFPPPPPP 950
Score = 21.8 bits (44), Expect(2) = 3.7
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 412 PPPPPPXXL 386
PPPPPP L
Sbjct: 946 PPPPPPPPL 954
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 22.6 bits (46), Expect(2) = 7.3
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -3
Query: 379 KPPPPPPEXXF 347
+PPPPPP+ +
Sbjct: 205 QPPPPPPQQNY 215
Score = 22.2 bits (45), Expect(2) = 7.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -3
Query: 418 AYPPPPPP 395
A PPPPPP
Sbjct: 204 AQPPPPPP 211
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 9.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3
Query: 418 AYPPPPPPXXLXXKPPP 368
A PPPPPP L PP
Sbjct: 1880 AAPPPPPPMALPKAGPP 1896
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.146 0.480
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,135,228
Number of Sequences: 5004
Number of extensions: 30595
Number of successful extensions: 310
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 669373152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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