Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_K14
         (1129 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    34   0.032
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.22 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.68 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    23   6.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.4  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 34.3 bits (75), Expect = 0.032
 Identities = 26/64 (40%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +1

Query: 427 GGGGXVFPGKXXAPPPGXXGVLFXGXXGFXXXKNRXRGGXGGGXGIPXXXGGKKXDP-KX 603
           GGG   F G    PPPG  G  F G  GF   +    GG GG  G P   GG +  P   
Sbjct: 187 GGGFGGFGGGSGGPPPGPGG--FGGFGGF-GGEGHHHGGHGGFGGGP---GGFEGGPGGF 240

Query: 604 GGXP 615
           GG P
Sbjct: 241 GGGP 244


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.5 bits (68), Expect = 0.22
 Identities = 15/30 (50%), Positives = 15/30 (50%)
 Frame = -3

Query: 974 GXPPPPPXXKKXPPPXFFXXXXPPPFSXPG 885
           G PPPPP     PPP F     PPP   PG
Sbjct: 7   GNPPPPP-----PPPGFEPPSQPPPPPPPG 31


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.9 bits (64), Expect = 0.68
 Identities = 15/49 (30%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
 Frame = -3

Query: 608  PPXXGSXFXPPXXXGIPXPPPXPPRXRFXXS-XKPXXPXKRTPXXPGGG 465
            PP   +   PP    +P PP  PP      S   P  P    P  P  G
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 23.4 bits (48), Expect(2) = 6.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 566 GIPXPPPXPP 537
           G+P PPP PP
Sbjct: 304 GLPPPPPPPP 313



 Score = 21.4 bits (43), Expect(2) = 6.2
 Identities = 8/21 (38%), Positives = 8/21 (38%)
 Frame = -3

Query: 560 PXPPPXPPRXRFXXSXKPXXP 498
           P PPP PP   F        P
Sbjct: 307 PPPPPPPPSNDFWKDSNEPAP 327


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = -3

Query: 968 PPPPPXXKKXPPPXFFXXXXPPPFSXPGKXG 876
           P P P     PPP       PPP   PG  G
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAG 772


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.151    0.497 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,158,863
Number of Sequences: 5004
Number of extensions: 28486
Number of successful extensions: 60
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 599646782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)