Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_K13
         (1206 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0339 + 15968610-15969227,15969304-15969708,15969817-15969981     31   1.4  
01_06_1078 + 34378985-34380064,34380155-34380283,34380362-343804...    29   7.3  
03_05_1063 + 30048724-30048753,30049036-30049175,30049282-300493...    29   9.7  

>08_02_0339 + 15968610-15969227,15969304-15969708,15969817-15969981
          Length = 395

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = +2

Query: 119 GSFGRLHIPNCHLSVFFLYNLQN-IPYRKQSPISLDTAPSPVGGT*TWLNITFSYVALWM 295
           GS+ R H+P  HL    +Y ++N IP+     I+  T   P  G    +    SY+A +M
Sbjct: 135 GSWQRQHVPPQHLEHDIIYLVENQIPFFILEKINEITGLIPTAGGSQLVRHFCSYIAEYM 194

Query: 296 CHQRNFWYPKKLR*KSVLKSDETD 367
              R +   ++   +  L +D  D
Sbjct: 195 LKLRGYAVGRRSAVEQTLATDGQD 218


>01_06_1078 +
           34378985-34380064,34380155-34380283,34380362-34380430,
           34380536-34380588,34381309-34381421,34381565-34382132,
           34382520-34382580,34382624-34382665
          Length = 704

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 311 FWYPKKLR*KSVLKSDETDDLDYTYFGDFLPCFPL 415
           FWY K    +S + S E ++L+ TY+   +P F L
Sbjct: 43  FWYNKSELEQSAILSVEIEELEMTYYRGCIPPFEL 77


>03_05_1063 +
           30048724-30048753,30049036-30049175,30049282-30049336,
           30049419-30049526,30050190-30050288,30050380-30050457,
           30050558-30050635,30051875-30051949,30052117-30052217,
           30052502-30052527,30053224-30053297,30053358-30053379,
           30054108-30054223,30054361-30054618,30054716-30054832,
           30055649-30055699,30055859-30056086,30056550-30056648,
           30056823-30056999,30057298-30057417
          Length = 683

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -1

Query: 240 TGLGAVSREMGDCFLYGIFCRLYRKNTDK 154
           +G GA S E G  F+ G  CRLYR + +K
Sbjct: 427 SGGGARSYEYGPPFVPGEICRLYRSSGEK 455


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,444,933
Number of Sequences: 37544
Number of extensions: 286592
Number of successful extensions: 559
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3689769684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)