Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_K13
         (1206 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016414-5|AAG24020.1|  585|Caenorhabditis elegans Hypothetical ...    29   5.0  
AF040641-5|AAB94944.1|  379|Caenorhabditis elegans Hypothetical ...    29   8.7  

>AF016414-5|AAG24020.1|  585|Caenorhabditis elegans Hypothetical
           protein D1065.1 protein.
          Length = 585

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 89  QALFVSINSVGSFGRLHIPNCHLSVFFLYNLQNIPYR 199
           + L  S N++  FG +H    +   FF +NL  + YR
Sbjct: 205 KVLLKSSNAIAKFGLMHSVAFYFDFFFKFNLYKLEYR 241


>AF040641-5|AAB94944.1|  379|Caenorhabditis elegans Hypothetical
           protein D1069.4 protein.
          Length = 379

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 464 VHYYIYHKTNELIQFISMGNMVKSRRNKCSLDRQFRLTLG-LISTAISW 321
           V+ YIY   +EL+ F+S+ N        C +  ++R T G ++    SW
Sbjct: 307 VNIYIYKNLSELLDFLSLINCSVDFLLYCVMSSRYRQTFGHMLIRVESW 355


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,186,505
Number of Sequences: 27780
Number of extensions: 279778
Number of successful extensions: 616
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3318157644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)