Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_K11
(1187 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 140 3e-34
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 39 0.001
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.008
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 34 0.045
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 34 0.045
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.059
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.059
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.10
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 32 0.14
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 32 0.18
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 31 0.31
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 31 0.31
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 30 0.55
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 30 0.55
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos... 30 0.55
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa... 30 0.72
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 30 0.72
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo... 30 0.72
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo... 30 0.72
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 29 1.3
SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos... 28 2.2
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi... 28 2.2
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 28 2.2
SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein fa... 28 2.2
SPBC1348.01 |||S. pombe specific DUF999 protein family 5|Schizos... 28 2.2
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 27 3.9
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe... 27 3.9
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 5.1
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 27 5.1
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 26 8.9
SPAC750.06c |||S. pombe specific DUF999 protein family 4|Schizos... 26 8.9
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 140 bits (340), Expect = 3e-34
Identities = 90/283 (31%), Positives = 135/283 (47%), Gaps = 31/283 (10%)
Frame = +1
Query: 223 GYENXXXXXGCPQVGPERLEKL-QSVINKIFSKFGKIVNE--YYPTTE-NG--LTTGYIF 384
GY+ G P V + + + + +K+ +K GK+ Y P E NG ++ G +F
Sbjct: 36 GYDTVVVIEGAPVVEEAKQQDFFRFLSSKVLAKIGKVKENGFYMPFEEKNGKKMSLGLVF 95
Query: 385 LEYSNPQNAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSDIPKEWEPPAPQPFKVQSDLQ 564
++ N A V+ + ++ K HTF+V +K P E+ + FK + L+
Sbjct: 96 ADFENVDGADLCVQELDGKQILKNHTFVVRKLNQLEKAFSTPDEFSFEERE-FKEREHLR 154
Query: 565 WYLMDPDAYDQFLVGIGTGVALQVWQNALPEPLLLQERPNWTETYAVWSPLGTYLATFHW 744
+L D DQF+ G V++ W P + +R NWTETY WSP+GTYL + H
Sbjct: 155 SWLTDYYGRDQFISYYGNRVSVN-WNRKSDVPEQIVDRENWTETYVQWSPMGTYLVSLHL 213
Query: 745 RGVALWAGPKFSQFQKFFHPEARFISFSPCENYIVTFS-----------------PSGDR 873
RG+ LW G + +F HP +F+ FSP E Y+V++S P D
Sbjct: 214 RGIQLWGGESWGMCARFLHPYVKFVDFSPNEKYLVSWSYEPVRLPPIGHPARETMPFTDD 273
Query: 874 GDDKKLIIWDIRTGQEKRSF--PPPDE------YVTWPIFRWS 978
+ K +WDI +G+ RSF PP E V WPIF+WS
Sbjct: 274 DEGKHCFVWDIASGRILRSFKIPPQPEGSKDGKKVIWPIFKWS 316
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 39.1 bits (87), Expect = 0.001
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Frame = +1
Query: 298 INKIFSKFGKIVN---EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 468
+ ++FSKFG+I + YP+TE ++ GY F+ +S+P A +A+ N K+ F+
Sbjct: 437 LEELFSKFGRIKSCTLASYPSTE--ISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFV 494
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 36.3 bits (80), Expect = 0.008
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 298 INKIFSKFGKIVNEYYPTTENG-LTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 468
I +IF +G I + + P + L GY ++EY AA AV NN +LD + F+
Sbjct: 115 IAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKMNNAELDGEELFV 172
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 33.9 bits (74), Expect = 0.045
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +1
Query: 271 ERLEKLQSVINKIFSKFGKIVNEYYP----TTENGLTTGYIFLEYSNPQNAAEAVKATNN 438
+ E + + FS +G +++ P T +GL TG +F+ YS+ ++A A++
Sbjct: 435 QEYEDIYESVKTQFSNYGPLIDIKIPRSIGTRNSGLGTGKVFVRYSDIRSAEVAMEEMKG 494
Query: 439 CKLD 450
CK +
Sbjct: 495 CKFN 498
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 33.9 bits (74), Expect = 0.045
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 289 QSVINKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTF 465
++ I ++++ GK V + G+ GY F+E+++P A+ A+ N H F
Sbjct: 106 EAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMNNKPIPGTNHLF 165
Query: 466 LVN 474
+N
Sbjct: 166 KLN 168
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 33.5 bits (73), Expect = 0.059
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 310 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 450
FSKFGK+ PT G G+ F+ + + A EA+ + N ++D
Sbjct: 128 FSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEID 174
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 33.5 bits (73), Expect = 0.059
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 289 QSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 435
+S++ F FG+I++ E + Y F+E+ P++A EA++ N
Sbjct: 19 ESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 32.7 bits (71), Expect = 0.10
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 262 VGPERLEKLQSVINKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 438
VG E + + IF + G + + + E+G GY F EY +P AA AV+ NN
Sbjct: 9 VGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNLNN 68
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 32.3 bits (70), Expect = 0.14
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 307 IFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 450
IFS+FGKI++ + E G + Y F+E+ N ++ +A N +D
Sbjct: 263 IFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLID 311
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 31.9 bits (69), Expect = 0.18
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 289 QSVINKIFSKFGKIVNE-YYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 438
+ V+ FS G++V ENG + GY F+ Y + + A A++A NN
Sbjct: 112 ERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNN 162
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 31.1 bits (67), Expect = 0.31
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 298 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCK 444
+ + + G ++N NGL+ G +EYS + A A+K +N K
Sbjct: 82 LKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLSNQK 130
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 31.1 bits (67), Expect = 0.31
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +1
Query: 298 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 468
++ FS FGKI++ E G GY F+ + + ++A A++ N L+ + ++
Sbjct: 184 LHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV 240
Score = 29.5 bits (63), Expect = 0.96
Identities = 16/81 (19%), Positives = 38/81 (46%)
Frame = +1
Query: 280 EKLQSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQH 459
E + + +F +FG+I + +N G+ F+ Y+N + A +AV N+ + +
Sbjct: 271 EITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKK 330
Query: 460 TFLVNLFTDFQKYSDIPKEWE 522
++ ++ ++ K +E
Sbjct: 331 LYVGRAQKKHEREEELRKRYE 351
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 30.3 bits (65), Expect = 0.55
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = -2
Query: 751 HLASGKLLSMFLKVTRRHRFRSSLVSPVTAGVQVMHSATPGEPHQSQCQQGTGHM 587
HLA L+ F+++ R FR SPV+AGV + E S+C + GH+
Sbjct: 678 HLAGSLLVGAFIQLACRKSFR----SPVSAGVPIPKDV--DEKGHSKCHRKYGHV 726
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 30.3 bits (65), Expect = 0.55
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 280 EKLQSVINKIFSKFGKIVNEYYPTTEN-GLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQ 456
E + + +F+ FG + N + G GY +EY+ + A +AV N LD++
Sbjct: 20 EATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNLSLLDEK 79
>SPBC1348.07 |||S. pombe specific DUF999 protein family
6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 30.3 bits (65), Expect = 0.55
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 406 NAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSD 504
N + K N K DK FL NLFT+F K+ D
Sbjct: 30 NIVKPQKDKINIKTDKIKFFLNNLFTEFSKFHD 62
>SPAC977.06 |||S. pombe specific DUF999 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 29.9 bits (64), Expect = 0.72
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 406 NAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSD 504
N + K N K DK FL NLFT+F K+ D
Sbjct: 30 NIIKPQKDKINIKTDKIKFFLNNLFTEFSKFHD 62
>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 29.9 bits (64), Expect = 0.72
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 577 DPDAYDQFLVGIGTGVALQVWQNALPEPLLLQERPNWTETYAVWSPLGTY 726
DP D+ L+ + G ++ W +P+ E N+ YA WSP G Y
Sbjct: 78 DPTHSDR-LMAVYAGKMIRFWDFRSAKPIAEIES-NYENIYATWSPSGNY 125
>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 165
Score = 29.9 bits (64), Expect = 0.72
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 406 NAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSD 504
N + K N K DK FL NLFT+F K+ D
Sbjct: 50 NIIKPQKDKINIKTDKIKFFLNNLFTEFSKFHD 82
>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 29.9 bits (64), Expect = 0.72
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 406 NAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSD 504
N + K N K DK FL NLFT+F K+ D
Sbjct: 30 NIIKPQKDKINIKTDKIKFFLDNLFTEFSKFHD 62
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 29.1 bits (62), Expect = 1.3
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Frame = +1
Query: 706 WSPLGTYLATF-HWRGVALWAGPKFSQFQKFF--HPEARFISFSPCENYIVTFSPSGDRG 876
+SP G Y AT H + LW + + F + +SF P Y+ T S
Sbjct: 453 FSPFGYYFATASHDQTARLWDVEHAAPLRVFVGHQNDVDCVSFHPNAAYLATGS------ 506
Query: 877 DDKKLIIWDIRTGQEKRSF 933
D +WD+RTG R F
Sbjct: 507 SDHTTRMWDVRTGGTVRVF 525
>SPAC212.01c |||S. pombe specific DUF999 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 28.3 bits (60), Expect = 2.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 274 RLEKLQSVINKIFSKFGKIVNEYYP 348
+ K++ +N +F++F K N YYP
Sbjct: 71 KTNKIKEFLNDLFTEFSKFHNSYYP 95
>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 280
Score = 28.3 bits (60), Expect = 2.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 274 RLEKLQSVINKIFSKFGKIVNEYYP 348
+ K++ +N +F++F K N YYP
Sbjct: 71 KTNKIKEFLNDLFTEFSKFHNSYYP 95
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 28.3 bits (60), Expect = 2.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 274 RLEKLQSVINKIFSKFGKIVNEYYP 348
+ K++ +N +F++F K N YYP
Sbjct: 71 KTNKIKEFLNDLFTEFSKFHNSYYP 95
>SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein
family 9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 28.3 bits (60), Expect = 2.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 274 RLEKLQSVINKIFSKFGKIVNEYYP 348
+ K++ +N +F++F K N YYP
Sbjct: 71 KTNKIKEFLNDLFTEFSKFHNSYYP 95
>SPBC1348.01 |||S. pombe specific DUF999 protein family
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 28.3 bits (60), Expect = 2.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 274 RLEKLQSVINKIFSKFGKIVNEYYP 348
+ K++ +N +F++F K N YYP
Sbjct: 71 KTNKIKEFLNDLFTEFSKFHNSYYP 95
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 27.5 bits (58), Expect = 3.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 874 GDDKKLIIWDIRTGQEKRSF 933
G DK++I+WD GQE F
Sbjct: 144 GLDKRIIVWDYNVGQEVMRF 163
>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 27.5 bits (58), Expect = 3.9
Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 682 NWTETYAVWSPLGTYLATFHWRG-VALWAG 768
N T Y PLG YLA FH +G V LW G
Sbjct: 384 NITAYYLFALPLGIYLA-FHGKGLVGLWIG 412
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 5.1
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +1
Query: 874 GDDKKLIIWDIRTGQEKRSFPPPDEYVT 957
G D + ++W++ TG+ SFP + T
Sbjct: 280 GKDGRAMVWNVETGESLGSFPRSGNWYT 307
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 814 FISFSPCENYIVTFSPSGDRGDDKKLIIWDIRTGQEKRSF 933
+I +SP + Y+++ S DK +I+WD TG++ R +
Sbjct: 260 YIRWSPDDRYLLSCSC------DKSVILWDAFTGEKLRDY 293
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 26.2 bits (55), Expect = 8.9
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +1
Query: 391 YSNPQNAAEAVKATNNCKL--DKQHTFLVNLFTDFQKYSDIPKEWEPPAPQPFKVQSD 558
Y N + V C++ +K + LF+D ++YS PP P P +V+SD
Sbjct: 190 YKNIKRWMRVVSDRPACRIAAEKVEDNTLTLFSDVERYS------HPPTPPPEQVRSD 241
>SPAC750.06c |||S. pombe specific DUF999 protein family
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.2 bits (55), Expect = 8.9
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 274 RLEKLQSVINKIFSKFGKIVNEYYP 348
+ K++ +N F++F K N YYP
Sbjct: 71 KTNKIKEFLNDPFTEFSKFHNSYYP 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,226,632
Number of Sequences: 5004
Number of extensions: 92962
Number of successful extensions: 312
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 639490422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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