Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_K11
         (1187 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    27   0.43 
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    24   2.3  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    24   2.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.0  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   4.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   4.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   9.2  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 26.6 bits (56), Expect = 0.43
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 628 LQVWQNALPEPLLLQERPNWT 690
           L  W   +P+P +L+ +P WT
Sbjct: 28  LPSWDGKMPQPCILKPKPLWT 48


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
 Frame = +1

Query: 253 CPQVGPE---RLEKLQSVINKIFSK-FGKIVNEY 342
           CPQ  PE   +++K+ S I + + K + KIV +Y
Sbjct: 80  CPQCSPEETRQIKKVLSHIQRTYPKEWSKIVQQY 113


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
 Frame = +1

Query: 253 CPQVGPE---RLEKLQSVINKIFSK-FGKIVNEY 342
           CPQ  PE   +++K+ S I + + K + KIV +Y
Sbjct: 80  CPQCSPEETRQIKKVLSHIQRTYPKEWSKIVQQY 113


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 463 FLVNLFTDFQKYSDIPKEWEPPAPQPFKVQSDLQWYLMD 579
           F V L T    Y     EW+PPA      + D++++  D
Sbjct: 125 FEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFD 163


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 259 QVGPERLEKLQSVINKIFSKFGKIVNE 339
           Q+ P+R++  Q   N++++   KIV+E
Sbjct: 324 QITPKRIQYAQHKENELYANLMKIVHE 350


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 259 QVGPERLEKLQSVINKIFSKFGKIVNE 339
           Q+ P+R++  Q   N++++   KIV+E
Sbjct: 362 QITPKRIQYAQHKENELYANLMKIVHE 388


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 9.2
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +1

Query: 547  VQSDLQWYLMDPDAYDQFLVGIGTGVA--LQVWQNALPEPLLLQERPNWTETYAVW 708
            V+S   +Y+         LVG GTG+A     W + L E   ++ RP+  E   VW
Sbjct: 952  VRSAPNFYMPSEPKAPMILVGPGTGIAPFRGFWHHRLAE---IKRRPD-LEYGKVW 1003


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 290,430
Number of Sequences: 438
Number of extensions: 6823
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40488336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)