Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_K09
(1182 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0478 + 8775892-8776377 40 0.005
03_02_0485 - 8808139-8808618 39 0.009
03_02_0484 + 8805053-8805538 38 0.012
03_02_0483 - 8804021-8804485 38 0.015
01_01_0227 + 1933247-1933699 37 0.027
06_01_1017 - 7951985-7952425 37 0.036
01_01_0229 - 1943473-1943922 33 0.58
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 32 0.77
>03_02_0478 + 8775892-8776377
Length = 161
Score = 39.5 bits (88), Expect = 0.005
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 8/78 (10%)
Frame = +1
Query: 253 EQIQVKVADDFIVI-----EAKHEEKKDEQGFISRH---FVRKYKLPQGSQPNKITSTLS 408
E+++V+V D I+ + EEK D+ + R F+R+++LP ++P +I +++
Sbjct: 77 EEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASME 136
Query: 409 ADGVLKIVVPKETAVLKD 462
+GVL + VPKE A D
Sbjct: 137 -NGVLTVTVPKEEAKKPD 153
>03_02_0485 - 8808139-8808618
Length = 159
Score = 38.7 bits (86), Expect = 0.009
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 8/72 (11%)
Frame = +1
Query: 253 EQIQVKVADDFIVI-----EAKHEEKKDEQGFISRH---FVRKYKLPQGSQPNKITSTLS 408
E+++V+V D I+ + EEK D+ + R F+R+++LP+ ++P +I +++
Sbjct: 75 EEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASME 134
Query: 409 ADGVLKIVVPKE 444
+GVL + VPKE
Sbjct: 135 -NGVLTVTVPKE 145
>03_02_0484 + 8805053-8805538
Length = 161
Score = 38.3 bits (85), Expect = 0.012
Identities = 22/72 (30%), Positives = 44/72 (61%), Gaps = 8/72 (11%)
Frame = +1
Query: 253 EQIQVKVADDFIVI-----EAKHEEKKDEQGFISRH---FVRKYKLPQGSQPNKITSTLS 408
E+++V+V D ++ + EEK D+ + R F+R+++LP+ ++P +I +++
Sbjct: 77 EEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASME 136
Query: 409 ADGVLKIVVPKE 444
+GVL + VPKE
Sbjct: 137 -NGVLTVTVPKE 147
>03_02_0483 - 8804021-8804485
Length = 154
Score = 37.9 bits (84), Expect = 0.015
Identities = 22/72 (30%), Positives = 45/72 (62%), Gaps = 8/72 (11%)
Frame = +1
Query: 253 EQIQVKVADDFIVIEA-----KHEEKKDEQGFISRH---FVRKYKLPQGSQPNKITSTLS 408
E+++V+V D ++ + + EEK D+ + R F+R+++LP+ ++P +I +++
Sbjct: 70 EEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASME 129
Query: 409 ADGVLKIVVPKE 444
+GVL + VPKE
Sbjct: 130 -NGVLTVTVPKE 140
>01_01_0227 + 1933247-1933699
Length = 150
Score = 37.1 bits (82), Expect = 0.027
Identities = 19/64 (29%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +1
Query: 292 IEAKHEEKKDEQGFISRHFVRKYKLPQGSQPNKITSTLSADGVLKIVVPK-ETAVLKDTA 468
++ K++E+ S F R+++LP+G++ +++++++ +GVL + VPK ET + A
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMD-NGVLTVTVPKEETKKPQLKA 145
Query: 469 IPVA 480
IP++
Sbjct: 146 IPIS 149
>06_01_1017 - 7951985-7952425
Length = 146
Score = 36.7 bits (81), Expect = 0.036
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 4/125 (3%)
Frame = +1
Query: 118 PSNFGXAFVLRSVDWLEHLPWHXGAIVKTQKXRFEXNLLVKDFTAEQIQVKVADDFIVIE 297
P ++ A ++DW+E H I + + + V+D + V+ A E
Sbjct: 20 PPDWASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVED--GNVLTVRGAAPHAAAE 77
Query: 298 AKHEEKKDEQGFISRH----FVRKYKLPQGSQPNKITSTLSADGVLKIVVPKETAVLKDT 465
+ E +KD ++ F R+ LP + +I +++ +GVL +VVPKE A +
Sbjct: 78 KEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVD-NGVLTVVVPKEPAPARPR 136
Query: 466 AIPVA 480
P+A
Sbjct: 137 TRPIA 141
>01_01_0229 - 1943473-1943922
Length = 149
Score = 32.7 bits (71), Expect = 0.58
Identities = 17/71 (23%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Frame = +1
Query: 253 EQIQVKVADDFIVI-----EAKHEEKKDEQGFISR---HFVRKYKLPQGSQPNKITSTLS 408
E+++V+V + +++ + E+K D+ + R F+R+++LP+ ++ +++ +++
Sbjct: 65 EEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASME 124
Query: 409 ADGVLKIVVPK 441
+GVL + VPK
Sbjct: 125 -NGVLTVTVPK 134
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 32.3 bits (70), Expect = 0.77
Identities = 18/71 (25%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Frame = +1
Query: 253 EQIQVKVADDFIVI-----EAKHEEKKDEQGFISR---HFVRKYKLPQGSQPNKITSTLS 408
E+++V+V + +++ + E+K D+ + R F+R+++LP+ ++ +++ + L
Sbjct: 66 EEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLE 125
Query: 409 ADGVLKIVVPK 441
+GVL + VPK
Sbjct: 126 -NGVLTVTVPK 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,708,681
Number of Sequences: 37544
Number of extensions: 397138
Number of successful extensions: 640
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3619930760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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