Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_K08
(1234 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 262 7e-71
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 43 8e-05
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 42 2e-04
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 40 5e-04
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 38 0.002
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 38 0.002
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 38 0.002
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 38 0.002
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 37 0.007
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 36 0.015
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 36 0.015
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 34 0.047
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 33 0.062
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 32 0.14
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 32 0.14
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 31 0.25
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 31 0.25
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 31 0.33
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc... 29 1.3
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa... 29 1.3
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 29 1.3
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ... 26 9.3
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 262 bits (642), Expect = 7e-71
Identities = 126/193 (65%), Positives = 153/193 (79%)
Frame = +1
Query: 361 LHISYKPQKXSPKSQGLVRSLLHDKIRDAYIHPQFLTDVMKPMKIEEIMDQEVQNLSGGE 540
L IS KPQ +PK QG VR L KIR A+++ +F ++V KP+ I+ I+DQEV NLSGGE
Sbjct: 401 LKISMKPQTIAPKFQGTVRMLFLKKIRAAFLNGKFQSEVCKPLSIDNIIDQEVLNLSGGE 460
Query: 541 LQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKRTGFVVEHDFIMAT 720
LQRVA+ L LG PADVYLIDEPSAYLDSEQR++A+KVI+RFI+++++T F+VEHDFIMAT
Sbjct: 461 LQRVAICLALGMPADVYLIDEPSAYLDSEQRIIASKVIRRFIVNSRKTAFIVEHDFIMAT 520
Query: 721 YLADRVIVFEGTPSSNATAHAPQSLLNGMNKFLELLGITFRRDPNNFRPRINKHASVKDI 900
YLADRVI+FEG PS +A + PQSLL GMN FL+ L +TFRRDPN RPRINK S D
Sbjct: 521 YLADRVILFEGQPSRDARCNPPQSLLTGMNTFLKNLDVTFRRDPNTLRPRINKFDSQMDQ 580
Query: 901 EQKRAGQYFFXED 939
EQK AG YFF E+
Sbjct: 581 EQKNAGNYFFLEN 593
Score = 95.5 bits (227), Expect = 1e-20
Identities = 51/117 (43%), Positives = 71/117 (60%)
Frame = +1
Query: 472 DVMKPMKIEEIMDQEVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKV 651
+VM ++ ++++EV +LSGGELQR A+ + ADVY+ DEPS+YLD +QRL A +V
Sbjct: 202 EVMDHTDLQNLLNREVGHLSGGELQRFAIAAVATQKADVYMFDEPSSYLDIKQRLKAGRV 261
Query: 652 IKRFILHAKRTGFVVEHDFIMATYLADRVIVFEGTPSSNATAHAPQSLLNGMNKFLE 822
I R +L VVEHD + YL+D V V G PS P S+ G+N FL+
Sbjct: 262 I-RSLLATTNYVIVVEHDLSVLDYLSDFVCVLYGVPSMYGVVTLPYSVREGINIFLD 317
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 43.2 bits (97), Expect = 8e-05
Identities = 31/115 (26%), Positives = 54/115 (46%)
Frame = +1
Query: 484 PMKIEEIMDQEVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRF 663
P + Q+ +LSGG+ QR+A+ L + + L+DE ++ LDS V + +
Sbjct: 1245 PNGYNTLCGQKGSSLSGGQKQRIAIARALIRNPKILLLDEATSALDSHSEKVVQEALN-- 1302
Query: 664 ILHAKRTGFVVEHDFIMATYLADRVIVFEGTPSSNATAHAPQSLLNGMNKFLELL 828
RT + H + + AD + VF+G + A HA L+ ++ EL+
Sbjct: 1303 AASQGRTTVAIAHR-LSSIQDADCIFVFDGGVIAEAGTHA--ELVKQRGRYYELV 1354
Score = 36.3 bits (80), Expect = 0.009
Identities = 24/93 (25%), Positives = 42/93 (45%)
Frame = +1
Query: 526 LSGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKRTGFVVEHD 705
+SGG+ QR+A+ + + L+DE ++ LDS+ ++ K + RT V+ H
Sbjct: 568 MSGGQKQRIAIARAVISDPKILLLDEATSALDSKSEVLVQKALDN--ASRSRTTIVIAHR 625
Query: 706 FIMATYLADRVIVFEGTPSSNATAHAPQSLLNG 804
+ AD ++V +H LNG
Sbjct: 626 -LSTIRNADNIVVVNAGKIVEQGSHNELLDLNG 657
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 41.9 bits (94), Expect = 2e-04
Identities = 23/86 (26%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = +1
Query: 496 EEIMDQEVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHA 675
+E+++ + +LSGG ++AL + K D+ L+DEP+ +LD +V ++ F+++
Sbjct: 539 DELINMPIGSLSGGWKMKLALTRAMFKNPDILLLDEPTNHLD----VVNVAWLENFLVNQ 594
Query: 676 KR-TGFVVEHDFIMATYLADRVIVFE 750
K + +V HD ++ +I +E
Sbjct: 595 KDVSSIIVSHDSGFLDHVVQAIIHYE 620
Score = 36.7 bits (81), Expect = 0.007
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +1
Query: 496 EEIMDQEVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRF 663
E + ++ LSGG+ ++ L C V ++DEP+ YLD + +K +K F
Sbjct: 894 ELVSHSRIKGLSGGQKVKLVLAACTWLRPHVIVLDEPTNYLDRDSLGALSKGLKNF 949
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 40.3 bits (90), Expect = 5e-04
Identities = 29/109 (26%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Frame = +1
Query: 430 DKIRDAYIHPQFLTDVMK--PMKIEEIMDQEVQNLSGGELQRVALVLCLGKPADVYLIDE 603
+ + DA + ++T+V++ P ++ + + +N SGG++QR+A L + + ++DE
Sbjct: 1203 NSVMDA-LDKTYMTEVIQNLPNGLDTPLLEFSKNFSGGQIQRLAFARALLRNPRLLILDE 1261
Query: 604 PSAYLDSEQRLVAAKVIKRFILHAKRTGFVVEHDFIMATYLADRVIVFE 750
++ LDS+ L+ K I+ + T ++ H + LADR+IV +
Sbjct: 1262 CTSALDSKSSLLLEKTIQ----NLSCTVLIITHQPSLMK-LADRIIVMD 1305
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +1
Query: 523 NLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAK-RTGFVVE 699
+LSGG+ QR+AL L + ++ ++DEP++ LD + + I+ H K +T V+
Sbjct: 570 SLSGGQQQRIALARALLRDTEILILDEPTSALDPITKNLVMDAIR---AHRKGKTTLVIT 626
Query: 700 HD 705
HD
Sbjct: 627 HD 628
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 38.3 bits (85), Expect = 0.002
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = +1
Query: 523 NLSGGELQRVALVLCLGKPADVYLIDEPSAYLD-SEQRLVAAKVIKRFILHAKRTGFVVE 699
+LSGG+ QRV+L L A+VY+ D+ + LD S R + +L K T +
Sbjct: 706 SLSGGQKQRVSLARALYSNAEVYIFDDIFSALDVSTSRKIYESCFLSTLLQHK-TIILFT 764
Query: 700 HDFIMATYLADRVIVFEGTPSSNATAHAPQSLL 798
H+ + +A+ VIV + + + + + Q L+
Sbjct: 765 HNVSLCLPIAENVIVLKNSTAQLVSPDSIQELV 797
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 38.3 bits (85), Expect = 0.002
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 511 QEVQNLSGGELQRVALVLCLG-KPADVYLIDEPSAYLDSEQRLVAAKVIKRF 663
Q++ LSGG+ RVA CLG + + ++DEP+ +LD E + +KRF
Sbjct: 632 QKMITLSGGQKSRVAFA-CLGLQNPHILILDEPTNHLDMESMDALTRAVKRF 682
Score = 32.3 bits (70), Expect = 0.14
Identities = 22/82 (26%), Positives = 36/82 (43%)
Frame = +1
Query: 496 EEIMDQEVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHA 675
+E+ + SGG R++L L D+ L+DEPS LD + + + ++
Sbjct: 345 QEMQSHATKTFSGGWRMRLSLARALFCQPDLLLLDEPSNMLD----VPSIAFLSEYLQTY 400
Query: 676 KRTGFVVEHDFIMATYLADRVI 741
K VV HD +A +I
Sbjct: 401 KNIVLVVSHDRSFLNEVATDII 422
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 38.3 bits (85), Expect = 0.002
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +1
Query: 499 EIMDQEVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAK 678
E+ + V +LSGG ++ L + + AD+ L+DEP+ +LD + ++ ++ K
Sbjct: 554 EMQENPVASLSGGWKMKLELARAMLQKADILLLDEPTNHLD----VANIAWLEAYLTSQK 609
Query: 679 R-TGFVVEHDFIMATYLADRVIVFEG 753
T +V HD ++ +I +EG
Sbjct: 610 NITCLIVSHDSSFLDHVCTDIIHYEG 635
Score = 32.7 bits (71), Expect = 0.11
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 517 VQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSE 627
+ +LSGG+ +V + CL + ++DEP+ +LD +
Sbjct: 908 ISSLSGGQKVKVVIAACLWNNPQLLVLDEPTNFLDRD 944
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 38.3 bits (85), Expect = 0.002
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = +1
Query: 526 LSGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKRTGFVVEHD 705
LSGG+ QR+A+ L + ++DE ++ LD E ++ K I+ + + T + H
Sbjct: 620 LSGGQKQRIAIARALLRNPAFLILDEATSALDGEAEVMVDKTIQSLMHNRSMTTITIAHK 679
Query: 706 FIMATYLADRVIV 744
+ AD++IV
Sbjct: 680 -LATIRRADQIIV 691
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 36.7 bits (81), Expect = 0.007
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = +1
Query: 526 LSGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKRTGFVVEH 702
LSGGE QRVA+ + K + L+DE ++ LD+ + R L + RT V+ H
Sbjct: 721 LSGGEKQRVAVARAILKDPSIILLDEATSALDTNTERQIQAALNR--LASGRTAIVIAH 777
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 35.5 bits (78), Expect = 0.015
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = +1
Query: 511 QEVQNLSGGE--LQRVALVLCLG--KPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAK 678
+ + NLSGGE L +ALV L KP +Y++DE A LD + + A IK K
Sbjct: 1225 KNISNLSGGEKTLSSLALVFALHNYKPTPLYVMDEIDAALDFKNVSIVANYIKE---RTK 1281
Query: 679 RTGFVV 696
F+V
Sbjct: 1282 NAQFIV 1287
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 35.5 bits (78), Expect = 0.015
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +1
Query: 487 MKIEEIMDQEVQNLSGGELQRVALVLCLG----KPADVYLIDEPSAYLDSEQRLVAAKVI 654
+KI I + LSGG+ VAL L + KPA +Y++DE A LD ++I
Sbjct: 1073 VKIGSIWKDSLAELSGGQRSLVALALIMSLLKYKPAPMYILDEIDAALDLSHTQNIGRLI 1132
Query: 655 K 657
K
Sbjct: 1133 K 1133
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 33.9 bits (74), Expect = 0.047
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +1
Query: 547 RVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFI-LHAKRTGF---VVEHD 705
R+AL CLG + +DEP+ LD E AK + R + K+ F V+ HD
Sbjct: 1195 RLALAECLGVNCGILALDEPTTNLDEENICSLAKNLSRIVEFRRKQANFQLIVITHD 1251
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 33.5 bits (73), Expect = 0.062
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +1
Query: 496 EEIMDQEVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSE 627
+E+M + +++SGG RVAL L + L+DEP+ +LD E
Sbjct: 211 QEMMAKPTKDMSGGWRMRVALSRALFIKPSLLLLDEPTNHLDLE 254
Score = 26.6 bits (56), Expect = 7.1
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 514 EVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVI 654
E++ LS G RV + + L+DEP+ +LD AK I
Sbjct: 509 EIRTLSDGLKSRVVFAALALEQPHILLLDEPTNHLDITSIDALAKAI 555
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 32.3 bits (70), Expect = 0.14
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +1
Query: 511 QEVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKRTGF 690
Q+ +LSGG+ R++L + AD+YL+D+ L S + V+ +IK GF
Sbjct: 699 QKGASLSGGQKSRISLARAIYSQADIYLLDD---VLSSVDQHVSRDLIKNLF---GPEGF 752
Query: 691 VVEHDFIMAT 720
+ H ++ T
Sbjct: 753 LRTHCVVLTT 762
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 32.3 bits (70), Expect = 0.14
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = +1
Query: 460 QFLTDVMKPMKIEEIMDQEVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLV 639
Q + + ++ ++ + NLS G+ +R L L + + L+DEP A LD R V
Sbjct: 127 QHVQEAASMTQLSHLLPSSLINLSNGQSRRAMLASKLVQRPQLLLLDEPYAGLDVTSRSV 186
Query: 640 AAKVIKRFILH 672
+ ++ H
Sbjct: 187 LSSLLGEMSNH 197
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 31.5 bits (68), Expect = 0.25
Identities = 22/71 (30%), Positives = 35/71 (49%)
Frame = +1
Query: 493 IEEIMDQEVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILH 672
+ EI ++ V LSGG+ QR+AL + P + L+D+ + LD K + L
Sbjct: 730 LTEIGEKGV-TLSGGQKQRIALARAVYSPTSIVLMDDVFSALDIHTSNWIYKHCFQSSLM 788
Query: 673 AKRTGFVVEHD 705
RT +V H+
Sbjct: 789 ENRTVILVTHN 799
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 31.5 bits (68), Expect = 0.25
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 523 NLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIK 657
NLS G+ Q + L L P V L+DE +A +D E + + I+
Sbjct: 1360 NLSSGQRQLMCLTRALLTPTRVLLLDEATAAVDVETDAIVQRTIR 1404
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +1
Query: 523 NLSGGELQRVALVLCLGKPADVYLIDEPSAYLD 621
+LSGG+ R++L + +D+YL+D+ + +D
Sbjct: 705 SLSGGQKARISLARAVYSRSDIYLLDDILSAVD 737
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 31.1 bits (67), Expect = 0.33
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 496 EEIMDQEVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSE 627
+E++ + LSGG R+AL L + ++DEP+ +LD E
Sbjct: 411 DEMIAKRTNELSGGWRMRIALARILFIKPTLMMLDEPTNHLDLE 454
>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 164
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Frame = +1
Query: 433 KIRDAYIHPQFLTDVMKPMKIEEIMDQEVQNLSGGELQRVA------LVLCLGKPADVYL 594
+ DA +H +TD+++ + EE++ E ++L +R+A V C+ + D+Y
Sbjct: 28 RFTDAVLHTHAITDLIRDTQKEELIAAEFKSLPKDWSERLASENPADYVACIEELLDIYP 87
Query: 595 IDEPSAYLDS 624
+ YL++
Sbjct: 88 MQGGREYLET 97
>SPBC776.12c |hsk1||serine/threonine protein kinase
Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 29.1 bits (62), Expect = 1.3
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 761 EGVPSNTITRSARYVAIIKSCSTTKPVRLAWRMNLLITL 645
E +P N +R +YVAI K +T+ P R+ + +L L
Sbjct: 112 EKIPVNEDSRKPKYVAIKKIYATSSPARIYNELEILYLL 150
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 29.1 bits (62), Expect = 1.3
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +1
Query: 595 IDEPSAYLDSEQ---RLVAAKVIKRFILHAKRTGFVVEHDFIMATY 723
ID S LDS R A V+ IL+ + TGF +DFI AT+
Sbjct: 965 IDYDSPELDSVYEGVRTTIAVVLSDLILNVEPTGFSFVYDFIRATF 1010
>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 9.3
Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 10/139 (7%)
Frame = +1
Query: 337 EGSGQLPQLHISYKPQKXSPKSQGLVRSLLHDKIRDAYIHPQFLTD------VMKPMKIE 498
E SG+ + + + +P+ +P S V +D Y H L D V+ P +
Sbjct: 43 EYSGRTRRRNRNTRPRVSAPSSSSTVVP------KDLYSHRATLEDDELNFGVVDPEGEK 96
Query: 499 EIMDQEVQNLSGGELQRVALVLCLGKPADVYLID-EPS---AYLDSEQRLVAAKVIKRFI 666
++ E+ L+GG R CLG+ +Y++ EP+ Y DS + + + + I
Sbjct: 97 KV--NELGYLNGGREYRCRTFTCLGRGNRLYMLSTEPARAMGYRDSYLLFLKHRSLHKII 154
Query: 667 LHAKRTGFVVEHDFIMATY 723
+ ++E + I +Y
Sbjct: 155 VDDSEKWDLIERNIIPHSY 173
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,633,447
Number of Sequences: 5004
Number of extensions: 68071
Number of successful extensions: 184
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 669373152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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