Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_K07
         (1192 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    26   0.75 
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    23   7.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   9.2  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.8 bits (54), Expect = 0.75
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 578 RIKLARMTALWIGNGCVPPSVLLVLVNEH 664
           R  +  ++ +W+G  C+    LL++ NEH
Sbjct: 156 RRMIVYVSLVWLGAACISLPPLLIMGNEH 184



 Score = 22.2 bits (45), Expect = 9.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 137 MSQKVEKPVLSGQRIKT 187
           M QK+EKPVLS     T
Sbjct: 314 MLQKLEKPVLSSSTTTT 330


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 584 KLARMTALWIGNGC 625
           KL RMT  W+G  C
Sbjct: 1   KLWRMTGTWVGGFC 14


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 9.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 272 LDAAYKYLDSAGSKLDYRRYGEVIFDVLI 358
           +D  Y  LDS    ++   YG  + DV++
Sbjct: 163 MDLHYYPLDSQNCTVEIESYGYTVLDVVM 191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 274,745
Number of Sequences: 438
Number of extensions: 6304
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40608837
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)