Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_K03
         (1167 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    29   1.6  
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom...    28   2.2  
SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po...    27   3.8  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    27   6.6  
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    26   8.7  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    26   8.7  

>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 62  GVFYFHKKITKSSIFSIFTYINLL 133
           GVF+F + + K S F++ T+I LL
Sbjct: 237 GVFFFRRSLKKVSYFNLATFITLL 260


>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 868 DLSRFGSYRDTNSDDYESDAEGSDXEVHDEE 960
           DL  +    D+N DD+ S++E    E H EE
Sbjct: 192 DLEDYKEGDDSNWDDFGSESEDDSKEAHSEE 222


>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 262 DKILSELKAKQEEEDACRMFENMKLNGID 348
           ++ + ++K + E+ED  R+FEN   N +D
Sbjct: 65  EQTIEDVKEQLEDEDLARLFENCMPNTLD 93


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -2

Query: 347 SIPFSFI-FSNIRHASSSSCFAFNSDKILSYKICILAPLSLNLDI-KLLLFNNLI 189
           ++P+ F+ F+N  H+   + F++N+ + +        P  LN++  K  L NN++
Sbjct: 370 NLPYEFVRFNNSMHSIGDNNFSYNNSEAVLQIFAQSVPRILNIEAKKSKLENNIL 424


>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 280 LKAKQEEEDACRMFENMKLNGIDKQSVQELEWTGTIK 390
           L  KQ     CR+ E +K    DK+S QE  W   ++
Sbjct: 24  LVGKQSPYCVCRVGEVVKRTQTDKRSGQEPSWNAVLE 60


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 880 FGSYRDTNSDDYESDAEGSDXEVHDEEP 963
           FG Y    SD  + D E  +   HD EP
Sbjct: 196 FGKYLPKKSDTLDMDLESHNMTFHDYEP 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,352,583
Number of Sequences: 5004
Number of extensions: 89726
Number of successful extensions: 250
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 625545148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)