Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_K03
(1167 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 26 0.55
DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein pr... 26 0.73
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 25 1.3
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 25 1.7
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 25 1.7
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 25 1.7
AF023619-1|AAC39040.1| 355|Apis mellifera arginine kinase protein. 24 3.0
AF023666-1|AAC14552.1| 363|Apis mellifera sn-glycerol-3-phospha... 23 5.2
AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 23 6.8
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 22 9.0
AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase ... 22 9.0
AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase ... 22 9.0
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 26.2 bits (55), Expect = 0.55
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -2
Query: 560 IYLTWGISSILIRSSG--VIESFSGSKILIFFSWNVFWVN 447
IY +S L R+ G V +++ S +++ SW FW+N
Sbjct: 227 IYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWIN 266
>DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein
protein.
Length = 484
Score = 25.8 bits (54), Expect = 0.73
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 620 LCGLNCLITLALVLCSVLLTIYLTWGISSIL-IRSS 516
L G+ CL + L S +++ L W I+ I+ IR S
Sbjct: 382 LLGIQCLTVVCLAFWSFIVSTILLWFINKIIPIRMS 417
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 25.0 bits (52), Expect = 1.3
Identities = 7/23 (30%), Positives = 16/23 (69%)
Frame = -2
Query: 512 VIESFSGSKILIFFSWNVFWVNI 444
+I++F+ S +++ SW FW+ +
Sbjct: 203 LIQTFAPSTLVVMLSWFSFWLGL 225
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 24.6 bits (51), Expect = 1.7
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -2
Query: 527 IRSSG--VIESFSGSKILIFFSWNVFWVN 447
+RS G +I+ + S +++ SW FW+N
Sbjct: 217 VRSMGYYLIQIYIPSGLIVIISWVSFWLN 245
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 24.6 bits (51), Expect = 1.7
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -2
Query: 527 IRSSG--VIESFSGSKILIFFSWNVFWVN 447
+RS G +I+ + S +++ SW FW+N
Sbjct: 217 VRSMGYYLIQIYIPSGLIVIISWVSFWLN 245
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 24.6 bits (51), Expect = 1.7
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -2
Query: 527 IRSSG--VIESFSGSKILIFFSWNVFWVN 447
+RS G +I+ + S +++ SW FW+N
Sbjct: 156 VRSMGYYLIQIYIPSGLIVIISWVSFWLN 184
>AF023619-1|AAC39040.1| 355|Apis mellifera arginine kinase protein.
Length = 355
Score = 23.8 bits (49), Expect = 3.0
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -2
Query: 92 WLFFCGNRKHQLC-VCHFWPKSKGIPYRVD 6
+LF G+R Q C FWP +GI + D
Sbjct: 185 FLFKEGDRFLQAANACRFWPTGRGIYHNDD 214
>AF023666-1|AAC14552.1| 363|Apis mellifera sn-glycerol-3-phosphate
dehydrogenase protein.
Length = 363
Score = 23.0 bits (47), Expect = 5.2
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -2
Query: 665 LCISFSGSWTSVFVVLCGLN 606
+CI SG+W S + G+N
Sbjct: 7 ICIVGSGNWGSTIAKIIGIN 26
>AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine
receptor protein.
Length = 694
Score = 22.6 bits (46), Expect = 6.8
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 758 ESSIDNIFAGPCIVGGGV 705
ESS++++F+GP GGV
Sbjct: 47 ESSLNDLFSGPEESSGGV 64
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 22.2 bits (45), Expect = 9.0
Identities = 7/22 (31%), Positives = 13/22 (59%)
Frame = -2
Query: 512 VIESFSGSKILIFFSWNVFWVN 447
+I+ + +L+ SW FW+N
Sbjct: 217 LIQVYGPCVLLVVLSWVSFWLN 238
>AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase
protein.
Length = 492
Score = 22.2 bits (45), Expect = 9.0
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 841 GVKMSQLPLDLSRFGSYRDTNSDDYESDAEGSDXEVHD 954
G+ + + PLDL R ++DT ++ EG+ ++D
Sbjct: 353 GIFLPKHPLDLLREADFKDTEILIGNNENEGTYFILYD 390
>AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase
protein.
Length = 628
Score = 22.2 bits (45), Expect = 9.0
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 841 GVKMSQLPLDLSRFGSYRDTNSDDYESDAEGSDXEVHD 954
G+ + + PLDL R ++DT ++ EG+ ++D
Sbjct: 353 GIFLPKHPLDLLREADFKDTEILIGNNENEGTYFILYD 390
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 293,655
Number of Sequences: 438
Number of extensions: 6319
Number of successful extensions: 26
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 39644829
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -