Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_K02
         (1233 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   3.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.3  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +3

Query: 987  FFXXGXGGGGGGGXXXXXXXPPPPPG 1064
            F   G  GGG GG       PPP PG
Sbjct: 180  FHHRGHNGGGFGGFGGGSGGPPPGPG 205


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.6 bits (51), Expect(2) = 3.8
 Identities = 12/34 (35%), Positives = 13/34 (38%)
 Frame = -2

Query: 890 PLFXPXXXXGGXPXPPRXFXXXGXXNPPXRGXPP 789
           P+  P    GG P PP      G   PP    PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 21.0 bits (42), Expect(2) = 3.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 1022 PPPPPP 1005
            PPPPPP
Sbjct: 732  PPPPPP 737


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -3

Query: 916 GXPPXXPXNPFFXPPXXXGXXPXPPGF 836
           G PP  P  P F PP      P PPG+
Sbjct: 7   GNPPPPPPPPGFEPPSQP-PPPPPPGY 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,401,661
Number of Sequences: 5004
Number of extensions: 27702
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 669373152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)