Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_K02
(1233 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 27 0.32
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 27 0.32
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical p... 27 1.3
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.7
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.7
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.7
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 31 2.2
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 31 2.2
AF038615-6|AAB94146.1| 157|Caenorhabditis elegans Ground-like (... 31 2.2
U53148-3|AAB37077.1| 282|Caenorhabditis elegans Ground-like (gr... 30 3.9
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 30 3.9
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 25 4.7
Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical p... 29 5.1
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 5.1
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 5.1
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 29 5.1
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 29 5.1
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 5.1
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 5.1
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 29 5.1
Z81472-1|CAB03889.1| 173|Caenorhabditis elegans Hypothetical pr... 29 6.8
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 29 6.8
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 6.8
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 6.8
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 24 7.7
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 24 7.9
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 25 9.0
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 25 9.0
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 25 9.2
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 27.5 bits (58), Expect(2) = 0.32
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 999 GXGGGGGGGXXXXXXXPPPPP 1061
G GGGGGG PPP P
Sbjct: 58 GCGGGGGGCGGGGGCAPPPAP 78
Score = 27.5 bits (58), Expect(2) = 1.2
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 1005 GGGGGGGXXXXXXXPPPPP 1061
G GGGG PPPPP
Sbjct: 288 GSSGGGGYSAPAAAPPPPP 306
Score = 24.6 bits (51), Expect(2) = 0.32
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 984 FFFXXGXGGGGGGG 1025
F F GGGGGGG
Sbjct: 20 FLFPSAGGGGGGGG 33
Score = 22.6 bits (46), Expect(2) = 1.2
Identities = 16/61 (26%), Positives = 16/61 (26%)
Frame = +3
Query: 843 GGXGXXPXXXGGXKKGFXGXXGGXPXXXXGXPXXXXXKXXXPXXGXXFFFXXGXGGGGGG 1022
GG G GG G G G G G GGGGG
Sbjct: 219 GGGGYASAPSGGGGYATSGGGGSGGYATGGSSGGGYSSGGSSGGGYSTGGGGGYAGGGGG 278
Query: 1023 G 1025
G
Sbjct: 279 G 279
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 27.5 bits (58), Expect(2) = 0.32
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 999 GXGGGGGGGXXXXXXXPPPPP 1061
G GGGGGG PPP P
Sbjct: 58 GCGGGGGGCGGGGGCAPPPAP 78
Score = 27.5 bits (58), Expect(2) = 1.2
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 1005 GGGGGGGXXXXXXXPPPPP 1061
G GGGG PPPPP
Sbjct: 288 GSSGGGGYSAPAAAPPPPP 306
Score = 24.6 bits (51), Expect(2) = 0.32
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 984 FFFXXGXGGGGGGG 1025
F F GGGGGGG
Sbjct: 20 FLFPSAGGGGGGGG 33
Score = 22.6 bits (46), Expect(2) = 1.2
Identities = 16/61 (26%), Positives = 16/61 (26%)
Frame = +3
Query: 843 GGXGXXPXXXGGXKKGFXGXXGGXPXXXXGXPXXXXXKXXXPXXGXXFFFXXGXGGGGGG 1022
GG G GG G G G G G GGGGG
Sbjct: 219 GGGGYASAPSGGGGYATSGGGGSGGYATGGSSGGGYSSGGSSGGGYSTGGGGGYAGGGGG 278
Query: 1023 G 1025
G
Sbjct: 279 G 279
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 31.5 bits (68), Expect = 1.3
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Frame = -1
Query: 885 FXPXPXXXGXPXXPQXFFXXGXPXPPPK--GXPPP 787
F P P G P F G P PPP G PPP
Sbjct: 73 FIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPP 107
>Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical
protein F47B8.13 protein.
Length = 245
Score = 26.6 bits (56), Expect(2) = 1.3
Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 5/26 (19%)
Frame = +3
Query: 999 GXGGGGGG-----GXXXXXXXPPPPP 1061
G GGGGGG G PPPPP
Sbjct: 18 GGGGGGGGEAGYSGGAGVEAPPPPPP 43
Score = 23.4 bits (48), Expect(2) = 1.3
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +3
Query: 990 FXXGXGGGGGGG 1025
+ G GGGGGGG
Sbjct: 9 YASGGGGGGGGG 20
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.1 bits (67), Expect = 1.7
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 879 PXPXXXGXPXXPQXFFXXGXPXPPPKGXPPP 787
P P G P P+ G P PPP G PPP
Sbjct: 256 PPPPAAGSPPPPRT----GSPPPPPTGSPPP 282
Score = 30.3 bits (65), Expect = 2.9
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = -2
Query: 920 PXXPPXXPXKPLFXPXXXXGGXPXPPRXFXXXGXXNPPXRGXPPP 786
P P P P P G P PP G PP G PPP
Sbjct: 233 PAGSPPPPPPPKGSPPLAGSGSPPPP---PAAGSPPPPRTGSPPP 274
Score = 29.9 bits (64), Expect = 3.9
Identities = 24/79 (30%), Positives = 24/79 (30%), Gaps = 1/79 (1%)
Frame = -2
Query: 1022 PPPPPPXTXXKKKXXPXXXXXXFXXXXXXXXXXXPXXPPXXPXKPL-FXPXXXXGGXPXP 846
PPPPPP K P P P P P GG P P
Sbjct: 237 PPPPPP-----PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 291
Query: 845 PRXFXXXGXXNPPXRGXPP 789
PR PP RG PP
Sbjct: 292 PR--AGSPPPPPPPRGSPP 308
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.1 bits (67), Expect = 1.7
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 879 PXPXXXGXPXXPQXFFXXGXPXPPPKGXPPP 787
P P G P P+ G P PPP G PPP
Sbjct: 277 PPPPAAGSPPPPRT----GSPPPPPTGSPPP 303
Score = 30.3 bits (65), Expect = 2.9
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = -2
Query: 920 PXXPPXXPXKPLFXPXXXXGGXPXPPRXFXXXGXXNPPXRGXPPP 786
P P P P P G P PP G PP G PPP
Sbjct: 254 PAGSPPPPPPPKGSPPLAGSGSPPPP---PAAGSPPPPRTGSPPP 295
Score = 29.9 bits (64), Expect = 3.9
Identities = 24/79 (30%), Positives = 24/79 (30%), Gaps = 1/79 (1%)
Frame = -2
Query: 1022 PPPPPPXTXXKKKXXPXXXXXXFXXXXXXXXXXXPXXPPXXPXKPL-FXPXXXXGGXPXP 846
PPPPPP K P P P P P GG P P
Sbjct: 258 PPPPPP-----PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 312
Query: 845 PRXFXXXGXXNPPXRGXPP 789
PR PP RG PP
Sbjct: 313 PR--AGSPPPPPPPRGSPP 329
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.1 bits (67), Expect = 1.7
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 879 PXPXXXGXPXXPQXFFXXGXPXPPPKGXPPP 787
P P G P P+ G P PPP G PPP
Sbjct: 262 PPPPAAGSPPPPRT----GSPPPPPTGSPPP 288
Score = 30.3 bits (65), Expect = 2.9
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = -2
Query: 920 PXXPPXXPXKPLFXPXXXXGGXPXPPRXFXXXGXXNPPXRGXPPP 786
P P P P P G P PP G PP G PPP
Sbjct: 239 PAGSPPPPPPPKGSPPLAGSGSPPPP---PAAGSPPPPRTGSPPP 280
Score = 29.9 bits (64), Expect = 3.9
Identities = 24/79 (30%), Positives = 24/79 (30%), Gaps = 1/79 (1%)
Frame = -2
Query: 1022 PPPPPPXTXXKKKXXPXXXXXXFXXXXXXXXXXXPXXPPXXPXKPL-FXPXXXXGGXPXP 846
PPPPPP K P P P P P GG P P
Sbjct: 243 PPPPPP-----PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 297
Query: 845 PRXFXXXGXXNPPXRGXPP 789
PR PP RG PP
Sbjct: 298 PR--AGSPPPPPPPRGSPP 314
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical protein
E02A10.2 protein.
Length = 385
Score = 30.7 bits (66), Expect = 2.2
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 999 GXGGGGGGGXXXXXXXPPPPP 1061
G GG GGGG PPPPP
Sbjct: 38 GGGGCGGGGGCGGGCAPPPPP 58
Score = 30.7 bits (66), Expect = 2.2
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 999 GXGGGGGGGXXXXXXXPPPPP 1061
G G GGGGG PPPPP
Sbjct: 39 GGGCGGGGGCGGGCAPPPPPP 59
Score = 30.7 bits (66), Expect = 2.2
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 999 GXGGGGGGGXXXXXXXPPPPP 1061
G GG GGGG PPPPP
Sbjct: 95 GGGGCGGGGGCGGGCAPPPPP 115
Score = 30.7 bits (66), Expect = 2.2
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 999 GXGGGGGGGXXXXXXXPPPPP 1061
G G GGGGG PPPPP
Sbjct: 96 GGGCGGGGGCGGGCAPPPPPP 116
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical protein
T04F8.8 protein.
Length = 165
Score = 30.7 bits (66), Expect = 2.2
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 999 GXGGGGGGGXXXXXXXPPPPP 1061
G GGGGG G PPPPP
Sbjct: 82 GGGGGGGYGRPQGYVPPPPPP 102
Score = 30.7 bits (66), Expect = 2.2
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 1058 GGGGXXXXXXXXPPPPPPXTXXKKKXXP 975
GGGG PPPPPP T + + P
Sbjct: 85 GGGGYGRPQGYVPPPPPPPTQPEPEPEP 112
>AF038615-6|AAB94146.1| 157|Caenorhabditis elegans Ground-like (grd
related) protein19 protein.
Length = 157
Score = 30.7 bits (66), Expect = 2.2
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 999 GXGGGGGGGXXXXXXXPPPPP 1061
G G GGGGG PPPPP
Sbjct: 30 GCGCGGGGGGGGCCAPPPPPP 50
>U53148-3|AAB37077.1| 282|Caenorhabditis elegans Ground-like (grd
related) protein10 protein.
Length = 282
Score = 29.9 bits (64), Expect = 3.9
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 987 FFXXGXGGGGGGGXXXXXXXPPPPP 1061
FF GGGG G PPPPP
Sbjct: 22 FFFGAAGGGGACGCAPRPACPPPPP 46
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 29.9 bits (64), Expect = 3.9
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +3
Query: 975 GXXFFFXXGXGGGGGGGXXXXXXXPPPPP 1061
G F G GGGGG PPPPP
Sbjct: 17 GFLFPMAGGGGGGGGCAPAAPACAPPPPP 45
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical protein
F02D10.1 protein.
Length = 316
Score = 24.6 bits (51), Expect(2) = 4.7
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 999 GXGGGGGGGXXXXXXXPPPPPG 1064
G GGGGG PP PG
Sbjct: 104 GEAAGGGGGCTGCCNPGPPGPG 125
Score = 23.4 bits (48), Expect(2) = 4.7
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +3
Query: 990 FXXGXGGGGGGG 1025
+ G GGGGGGG
Sbjct: 93 YGAGGGGGGGGG 104
>Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical
protein F47B8.14 protein.
Length = 255
Score = 29.5 bits (63), Expect = 5.1
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Frame = +3
Query: 990 FXXGXGGGG--GGGXXXXXXXPPPPP 1061
+ G GGGG GGG PPPPP
Sbjct: 20 YSSGGGGGGYSGGGGGGGDAAPPPPP 45
Score = 29.1 bits (62), Expect = 6.8
Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Frame = +3
Query: 999 GXGGG--GGGGXXXXXXXPPPPP 1061
G GGG GGGG PPPPP
Sbjct: 24 GGGGGYSGGGGGGGDAAPPPPPP 46
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical protein
W01B6.7 protein.
Length = 301
Score = 29.5 bits (63), Expect = 5.1
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +3
Query: 999 GXGGGGGGGXXXXXXXPPPPPG 1064
G GGGGGGG PP PG
Sbjct: 89 GGGGGGGGGCDGCCNPGPPGPG 110
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.5 bits (63), Expect = 5.1
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +3
Query: 999 GXGGGGGGGXXXXXXXPPPPPG 1064
G GGGGGGG PP PG
Sbjct: 89 GGGGGGGGGCDGCCNPGPPGPG 110
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 29.5 bits (63), Expect = 5.1
Identities = 21/84 (25%), Positives = 24/84 (28%), Gaps = 5/84 (5%)
Frame = -2
Query: 1022 PPPPPPXTXXK--KKXXPXXXXXXFXXXXXXXXXXXPXXPPXXPXKPLFXPXXXXG---G 858
PPPPPP + + P + P PP P P
Sbjct: 574 PPPPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPP 633
Query: 857 XPXPPRXFXXXGXXNPPXRGXPPP 786
P PP G PP PPP
Sbjct: 634 PPPPPMGLPAVGAGAPPPPPPPPP 657
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 29.5 bits (63), Expect = 5.1
Identities = 21/84 (25%), Positives = 24/84 (28%), Gaps = 5/84 (5%)
Frame = -2
Query: 1022 PPPPPPXTXXK--KKXXPXXXXXXFXXXXXXXXXXXPXXPPXXPXKPLFXPXXXXG---G 858
PPPPPP + + P + P PP P P
Sbjct: 400 PPPPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPP 459
Query: 857 XPXPPRXFXXXGXXNPPXRGXPPP 786
P PP G PP PPP
Sbjct: 460 PPPPPMGLPAVGAGAPPPPPPPPP 483
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.elegans
(nematode)collagen 2 (col-2) gene, complete cds. ).
Length = 301
Score = 29.5 bits (63), Expect = 5.1
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +3
Query: 999 GXGGGGGGGXXXXXXXPPPPPG 1064
G GGGGGGG PP PG
Sbjct: 89 GGGGGGGGGCDGCCNPGPPGPG 110
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.5 bits (63), Expect = 5.1
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +3
Query: 999 GXGGGGGGGXXXXXXXPPPPPG 1064
G GGGGGGG PP PG
Sbjct: 89 GGGGGGGGGCDGCCNPGPPGPG 110
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 29.5 bits (63), Expect = 5.1
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 999 GXGGGGGGGXXXXXXXPPPPP 1061
G GGG GG PPPPP
Sbjct: 196 GGGGGSGGSGGGSGRFPPPPP 216
Score = 29.5 bits (63), Expect = 5.1
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 999 GXGGGGGGGXXXXXXXPPPPP 1061
G GG GG G PPPPP
Sbjct: 197 GGGGSGGSGGGSGRFPPPPPP 217
>Z81472-1|CAB03889.1| 173|Caenorhabditis elegans Hypothetical
protein C16D6.1 protein.
Length = 173
Score = 29.1 bits (62), Expect = 6.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 837 FFXXGXPXPPPKGXPPP 787
+F G P PPP G PPP
Sbjct: 64 WFNGGPPGPPPHGPPPP 80
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical protein
C56A3.1 protein.
Length = 393
Score = 29.1 bits (62), Expect = 6.8
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +3
Query: 987 FFXXGXGGGGGGGXXXXXXXPPPP 1058
FF G GGGGGGG P P
Sbjct: 20 FFGMGGGGGGGGGGCCCGCGTPQP 43
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 6.8
Identities = 22/84 (26%), Positives = 24/84 (28%), Gaps = 5/84 (5%)
Frame = -2
Query: 1022 PPPPPPXTXXKKKXXPXXXXXXFXXXXXXXXXXXPXXP-----PXXPXKPLFXPXXXXGG 858
PPP PP + P + P P P P F P G
Sbjct: 274 PPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGM 333
Query: 857 XPXPPRXFXXXGXXNPPXRGXPPP 786
P PP G PP PPP
Sbjct: 334 PPPPPPGMRYPGGMPPP----PPP 353
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 6.8
Identities = 22/84 (26%), Positives = 24/84 (28%), Gaps = 5/84 (5%)
Frame = -2
Query: 1022 PPPPPPXTXXKKKXXPXXXXXXFXXXXXXXXXXXPXXP-----PXXPXKPLFXPXXXXGG 858
PPP PP + P + P P P P F P G
Sbjct: 284 PPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGM 343
Query: 857 XPXPPRXFXXXGXXNPPXRGXPPP 786
P PP G PP PPP
Sbjct: 344 PPPPPPGMRYPGGMPPP----PPP 363
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 23.8 bits (49), Expect(2) = 7.7
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 7/29 (24%)
Frame = +3
Query: 999 GXGGGGGGG-------XXXXXXXPPPPPG 1064
G GGGGGGG PP PPG
Sbjct: 115 GGGGGGGGGGCHCAAQASGCPAGPPGPPG 143
Score = 23.4 bits (48), Expect(2) = 7.7
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 975 GXXFFFXXGXGGGGGGG 1025
G + G GGGGGGG
Sbjct: 105 GGGYAAGGGGGGGGGGG 121
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical protein
T21B4.2 protein.
Length = 312
Score = 23.8 bits (49), Expect(2) = 7.9
Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Frame = +3
Query: 999 GXGGGGGGG---XXXXXXXPPPPPG 1064
G GGGGGGG P PPG
Sbjct: 110 GGGGGGGGGCCSCGIGAAGPAGPPG 134
Score = 23.4 bits (48), Expect(2) = 7.9
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +3
Query: 990 FXXGXGGGGGGG 1025
+ G GGGGGGG
Sbjct: 106 YATGGGGGGGGG 117
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 25.4 bits (53), Expect(2) = 9.0
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -2
Query: 1070 PXPRGGGGXXXXXXXXPPPPPP 1005
P P GG PPPPPP
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPP 748
Score = 25.4 bits (53), Expect(2) = 9.0
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -2
Query: 1070 PXPRGGGGXXXXXXXXPPPPPP 1005
P P GG PPPPPP
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPP 764
Score = 21.4 bits (43), Expect(2) = 9.0
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = -2
Query: 1022 PPPPPPXTXXKKKXXP 975
PPPPPP K P
Sbjct: 769 PPPPPPPPPGGFKGGP 784
Score = 21.4 bits (43), Expect(2) = 9.0
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = -2
Query: 1022 PPPPPPXTXXKKKXXP 975
PPPPPP K P
Sbjct: 770 PPPPPPPPGGFKGGPP 785
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 25.4 bits (53), Expect(2) = 9.0
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -2
Query: 1070 PXPRGGGGXXXXXXXXPPPPPP 1005
P P GG PPPPPP
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPP 748
Score = 25.4 bits (53), Expect(2) = 9.0
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -2
Query: 1070 PXPRGGGGXXXXXXXXPPPPPP 1005
P P GG PPPPPP
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPP 764
Score = 21.4 bits (43), Expect(2) = 9.0
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = -2
Query: 1022 PPPPPPXTXXKKKXXP 975
PPPPPP K P
Sbjct: 770 PPPPPPPPGGFKGGPP 785
Score = 21.4 bits (43), Expect(2) = 9.0
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = -2
Query: 1022 PPPPPPXTXXKKKXXP 975
PPPPPP K P
Sbjct: 771 PPPPPPPGGFKGGPPP 786
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 25.4 bits (53), Expect(2) = 9.2
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -2
Query: 1070 PXPRGGGGXXXXXXXXPPPPPP 1005
P P GG PPPPPP
Sbjct: 310 PPPPPPGGLPPITGGPPPPPPP 331
Score = 25.4 bits (53), Expect(2) = 9.2
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -2
Query: 1070 PXPRGGGGXXXXXXXXPPPPPP 1005
P P GG PPPPPP
Sbjct: 326 PPPPPPGGLPPISGGPPPPPPP 347
Score = 21.4 bits (43), Expect(2) = 9.2
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = -2
Query: 1022 PPPPPPXTXXKKKXXP 975
PPPPPP K P
Sbjct: 352 PPPPPPPPPGGFKGGP 367
Score = 21.4 bits (43), Expect(2) = 9.2
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = -2
Query: 1022 PPPPPPXTXXKKKXXP 975
PPPPPP K P
Sbjct: 353 PPPPPPPPGGFKGGPP 368
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,072,119
Number of Sequences: 27780
Number of extensions: 251995
Number of successful extensions: 2639
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2000
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3412067766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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