Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_J22
         (1364 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   5.8  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   5.8  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   5.8  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    29   7.6  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -2

Query: 940 PPPPXPVGXIPXXGXXPPXKXXXGXP 863
           PPPP P G  P  G  PP     G P
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLP 752


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -2

Query: 940 PPPPXPVGXIPXXGXXPPXKXXXGXP 863
           PPPP P G  P  G  PP     G P
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLP 752


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -2

Query: 940 PPPPXPVGXIPXXGXXPPXKXXXGXP 863
           PPPP P G  P  G  PP     G P
Sbjct: 310 PPPPPPGGLPPITGGPPPPPPPGGLP 335


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
            (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 25/126 (19%), Positives = 29/126 (23%)
 Frame = -3

Query: 1008 PPPPXPXXFXXHXXXXGQXXXXXPPPPXXWVXFXGXXXXPXKXPXXXTPXXPXPXEXXXX 829
            PPPP P  +        Q     PP P            P   P    P    P      
Sbjct: 30   PPPPKPAPYVEQSAQPQQTAPPPPPAPYPQQAVPAPAPPPAPYPQHAVPAPAPPLASYPQ 89

Query: 828  PXXXTPXXXFFFXPXXXXXP*XLGRGXPPXPXXXXXXXXPPXXXHXKKTPXXSXXXXSPP 649
                 P       P     P        P P        P    + ++ P        PP
Sbjct: 90   NAVPVP------APPPAPYPQHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPP 143

Query: 648  TPPXXP 631
             PP  P
Sbjct: 144  PPPHYP 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,277,208
Number of Sequences: 27780
Number of extensions: 214039
Number of successful extensions: 879
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3850470860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)