Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_J21
(1231 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 34 0.046
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.081
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.19
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.00
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 28 2.3
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 27 5.3
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 26 9.3
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 33.9 bits (74), Expect = 0.046
Identities = 19/45 (42%), Positives = 19/45 (42%)
Frame = -2
Query: 909 GXXKXPPXPGGXGGGXFXFXPXXXPGGAXGGFXGGXPGFFXXPXG 775
G PP PGG GG F G GGF GG GF P G
Sbjct: 196 GSGGPPPGPGGFGGFG-GFGGEGHHHGGHGGFGGGPGGFEGGPGG 239
Score = 33.9 bits (74), Expect = 0.046
Identities = 19/41 (46%), Positives = 19/41 (46%)
Frame = -2
Query: 885 PGGXGGGXFXFXPXXXPGGAXGGFXGGXPGFFXXPXGXPPP 763
PGG GGG F GG GGF GG GF P G P
Sbjct: 237 PGGFGGGPGGF------GGGLGGFGGGPGGFGGGPGGHGGP 271
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.1 bits (72), Expect = 0.081
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +1
Query: 490 PPPPGXXGXXFXGPPPPPP 546
PPPP G GPPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780
Score = 32.7 bits (71), Expect = 0.11
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +1
Query: 490 PPPPGXXGXXFXGPPPPPP 546
PPPPG G PPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +2
Query: 797 PGXPPXKPPXAPPGXXXGXKXKXPPPXPPGXGGXXXXP 910
P P P PP G PPP PPG G P
Sbjct: 742 PTPAPAPIPVPPPAPIMG--GPPPPPPPPGVAGAGPPP 777
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +2
Query: 800 GXPPXKPPXAPPGXXXGXKXKXPPPXPP 883
G PP PP PPG G PPP PP
Sbjct: 759 GGPPPPPP--PPGVA-GAGPPPPPPPPP 783
Score = 27.5 bits (58), Expect = 4.0
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 477 PXKKXPPPXGXGXXFXGPPPPPP 545
P PPP G PPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.9 bits (69), Expect = 0.19
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 806 PPXKPPXAPPGXXXGXKXKXPPPXPPG 886
PP PP PP + PPP PPG
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 27.5 bits (58), Expect = 4.0
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 492 PPPXGXGXXFXGPPPPPP 545
PPP G PPPPPP
Sbjct: 13 PPPPGFEPPSQPPPPPPP 30
Score = 27.1 bits (57), Expect = 5.3
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +1
Query: 490 PPPPGXXGXXFXGPPPPPP 546
PPPP G PPPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPP 28
Score = 27.1 bits (57), Expect = 5.3
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +1
Query: 490 PPPPGXXGXXFXGPPPPPP 546
PPPP PPPPPP
Sbjct: 12 PPPPPGFEPPSQPPPPPPP 30
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 1.00
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +2
Query: 797 PGXPPXKPPXAPPGXXXGXKXKXPPPXPPGXGGXXXXP 910
P PP P PP PPP PP G P
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSP 267
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +2
Query: 797 PGXPPXKPPXAPPGXXXGXKXKXPPPXPP 883
P PP PP APP G PP PP
Sbjct: 425 PSAPPSLPPSAPPSLPMG--APAAPPLPP 451
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -2
Query: 882 GGXGGGXFXFXPXXXPGGAXGGFXGGXPGFF 790
GG GGG GG+ GGF GG G F
Sbjct: 160 GGFGGGSRGGFGGGSRGGSRGGFRGGSRGGF 190
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 27.1 bits (57), Expect = 5.3
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 837 PGGAXGGFXGGXPG 796
PGGA GG GG PG
Sbjct: 615 PGGAPGGMPGGAPG 628
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 26.2 bits (55), Expect = 9.3
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -2
Query: 894 PPXPGGXGGGXFXFXPXXXPGGAXGGFXGGXPG 796
PP PG GG PG GGF G PG
Sbjct: 76 PPPPGAEGG----------PGAGFGGFPGAGPG 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.309 0.149 0.505
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,300,369
Number of Sequences: 5004
Number of extensions: 28374
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 667380970
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
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