Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_J17
         (1228 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical pr...    32   0.95 
AF024502-6|AAB70378.4|  402|Caenorhabditis elegans Hypothetical ...    31   2.2  
AF003132-2|AAB54134.2|  568|Caenorhabditis elegans Hypothetical ...    29   5.1  

>L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical
           protein C30A5.3 protein.
          Length = 223

 Score = 31.9 bits (69), Expect = 0.95
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 667 YKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIA 789
           Y+  R+F +E    ALL +   +P+TC   +  E W FL A
Sbjct: 71  YEHLRQFCIELNGLALLLQRECIPETCQQMTATEQWIFLCA 111


>AF024502-6|AAB70378.4|  402|Caenorhabditis elegans Hypothetical
           protein M151.1 protein.
          Length = 402

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
 Frame = -2

Query: 960 NPXNQWLLPVAISRV-LPGWTQDDSYRIRRSGRAERGVRAHSPAWSERPTPN*DTYSVSY 784
           NP  +   P A+  V   G++    +R RR     +    H  AW+ R  P    ++ + 
Sbjct: 59  NPLGEQRTPQAVRSVPKDGYSL---FRYRRMVFGAKDQLKHDKAWNNRSLPQKSRWNQAS 115

Query: 783 EKAPRFPKGERRTGIR*AAGSEQESARGSFQGETPGIF 670
            K  ++ K E + G     G+E+       +G+T   F
Sbjct: 116 VKLAQYQKAEEKMGFIKVFGTEEFQNYSKRRGQTRNSF 153


>AF003132-2|AAB54134.2|  568|Caenorhabditis elegans Hypothetical
           protein F37E3.2 protein.
          Length = 568

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
 Frame = +1

Query: 145 AGSLDPVHAQLH----*CVWXNHNSHAVXKMLYLCNLXCYCFI 261
           A S DP+HAQ H     C   NH+     +   LC   C CF+
Sbjct: 15  ARSCDPLHAQAHGINLVCCSLNHSLTPSCEFSSLCQETCSCFL 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,116,197
Number of Sequences: 27780
Number of extensions: 454957
Number of successful extensions: 1149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3391198850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)