Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_J16
(1263 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch... 41 4e-04
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.25
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.44
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.59
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 9.6
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 26 9.6
>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 257
Score = 40.7 bits (91), Expect = 4e-04
Identities = 19/45 (42%), Positives = 29/45 (64%)
Frame = +2
Query: 53 PKXTPSLXIPFLVILETIXNLXRPGTLAVRXTAXIIAGHLLITLL 187
P TP+ IP LV++E + + R +L +R A IIAGHL +++L
Sbjct: 155 PSGTPTPLIPLLVLIEFVSYIARGLSLGIRLGANIIAGHLTMSIL 199
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.5 bits (68), Expect = 0.25
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = -3
Query: 1180 PPXXXGXXXPPPRXGXPPPPXXXXPXXXXXXPPPPP 1073
PP PPP PPPP PPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 30.7 bits (66), Expect = 0.44
Identities = 15/29 (51%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +1
Query: 622 RGRGGGGXGXXGXKXXGPGXGXGG-XGFG 705
RG GGG G G GP G GG GFG
Sbjct: 183 RGHNGGGFGGFGGGSGGPPPGPGGFGGFG 211
Score = 30.3 bits (65), Expect = 0.59
Identities = 23/72 (31%), Positives = 23/72 (31%)
Frame = +1
Query: 484 GWXXPXXXGKXXXGCXGXXGXALVXXVPXGGGXXXXXXGXGFXXXVRGRGGGGXGXXGXK 663
G P G G G G GGG G G G GGG G G
Sbjct: 198 GGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGG 257
Query: 664 XXGPGXGXGGXG 699
G G G GG G
Sbjct: 258 PGGFGGGPGGHG 269
Score = 28.7 bits (61), Expect = 1.8
Identities = 20/62 (32%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Frame = +1
Query: 565 PXGGGXXXXXXGXGFXXXVRGRGGGGXGXXGXKXXGPGX-GXGGXGFGAXXXSXXXXXXG 741
P G G G G G GG G G GPG G G GFG G
Sbjct: 201 PPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGG 260
Query: 742 XG 747
G
Sbjct: 261 FG 262
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/61 (31%), Positives = 19/61 (31%)
Frame = +1
Query: 565 PXGGGXXXXXXGXGFXXXVRGRGGGGXGXXGXKXXGPGXGXGGXGFGAXXXSXXXXXXGX 744
P G G G G G GGG G G G G GG G G G
Sbjct: 204 PGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGG 263
Query: 745 G 747
G
Sbjct: 264 G 264
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = +2
Query: 743 RGXGXGERXXXXGGGGXXXPPGGGXXXXMXX*GXGXGXGXXXGXGGGGXXF 895
RG G GG G P GG G G G G GGG F
Sbjct: 183 RGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGF 233
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.3 bits (65), Expect = 0.59
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -3
Query: 1153 PPPRXGXPPPPXXXXPXXXXXXPPPPP 1073
P P G PPPP PPPPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Frame = -3
Query: 1153 PPPRX---GXPPPPXXXXPXXXXXXPPPPP 1073
PPP G PPPP PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = -3
Query: 1180 PPXXXGXXXPPPRXGXPPPPXXXXPXXXXXXPPPPP 1073
PP PPP PPPP PPPPP
Sbjct: 752 PPPAPIMGGPPP----PPPPPGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/51 (31%), Positives = 16/51 (31%)
Frame = -2
Query: 578 PPPXGTXXTKAXPXXPXQPXXXFPFXXGXXXPXXXXXXFGXXXPPPPGXXP 426
PPP T A P P P G P G PPPP P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPA--PIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/41 (31%), Positives = 14/41 (34%)
Frame = -3
Query: 1150 PPRXGXPPPPXXXXPXXXXXXPPPPPXXXXXXXXXXPXXAG 1028
PP PPPP PPPPP P +G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQSG 45
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 1153 PPPRXGXPPPPXXXXPXXXXXXPPPP 1076
PP PPPP P PPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 1.4
Identities = 20/80 (25%), Positives = 20/80 (25%), Gaps = 3/80 (3%)
Frame = -3
Query: 904 PXXKXXPPPPXPXXXAXXXPXPLXXHXXPXXXXXXXXXXXXPXGXXPFPPP---XPPXXX 734
P PP P P A P P P G P P P PP
Sbjct: 1134 PVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP 1193
Query: 733 XXVXGXXXGPQTXTPPXPXP 674
P PP P P
Sbjct: 1194 PSEAPPVPKPSVGVPPVPPP 1213
Score = 26.6 bits (56), Expect = 7.2
Identities = 18/73 (24%), Positives = 20/73 (27%), Gaps = 2/73 (2%)
Frame = -3
Query: 886 PPPPXPXXXAXXXPXPLXXHXXPXXXXXXXXXXXXPXGXXPFPPPX--PPXXXXXVXGXX 713
PP P P + P G P PPP PP V
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209
Query: 712 XGPQTXTPPXPXP 674
P + PP P P
Sbjct: 1210 VPPPSTAPPVPTP 1222
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 9.6
Identities = 19/77 (24%), Positives = 20/77 (25%), Gaps = 8/77 (10%)
Frame = -2
Query: 1085 PPPPXRXXXXGXPXPXXGRXXXXP--------XXXXPXXXXXXXXXPXPXGPPPXXXXXF 930
PPPP P P GR P P P PPP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRS 399
Query: 929 XXXXPGXGXXXKXPTPP 879
P G + TPP
Sbjct: 400 APALPPLGNASRTSTPP 416
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.2 bits (55), Expect = 9.6
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = -1
Query: 642 PPPXPPPDPXXETXAXXXLXXXPXXGXRXNQSXP 541
PPP PPP+ + L P R NQ P
Sbjct: 371 PPPPPPPELLNHSPKSRPLGDKPYLFYRNNQIGP 404
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,216,245
Number of Sequences: 5004
Number of extensions: 28040
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 685576410
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -