Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_J15
         (1233 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    27   5.3  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   9.3  
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    26   9.3  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 402  GAISAALAPLSSVTLXQLXYLRXCRLIH 485
            G +S AL  LSS+T+     ++ CR +H
Sbjct: 951  GLLSCALISLSSLTITVFCAIKSCRYLH 978


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 840 LLQLMKWNIQLFLKLPAVP-QIQNQMK 917
           + Q + WN ++F+K+  +P QIQN  K
Sbjct: 85  VFQAIDWNSKIFIKMLQLPNQIQNSRK 111


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 956  THRNIIXCHSIYAINMERLSVMLIILVXSKIYVVT*XMXII 1078
            T   ++   S Y+I  E+++V +   + S+IYVV   M II
Sbjct: 357  TDSRLLVVVSTYSIGKEKVAVAIAKSLSSRIYVVPRKMHII 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,241,701
Number of Sequences: 5004
Number of extensions: 58220
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 669373152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)