Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_J15
         (1233 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0139 + 5753426-5754841,5755566-5755655,5756011-5756379,575...    29   5.7  
06_01_0503 - 3596664-3596837,3597647-3598069,3598362-3598595,359...    29   5.7  

>10_02_0139 +
           5753426-5754841,5755566-5755655,5756011-5756379,
           5756796-5756982,5757567-5757631
          Length = 708

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 794 RVNVDDGVDSLGPRCPPTIDEMEHSAVFEIACSAPNPEP 910
           +V VD  V ++GP  P    +++H   F     A NP+P
Sbjct: 76  QVFVDPAVAAVGPAFPSASPQLQHGGGFAWPSPASNPQP 114


>06_01_0503 -
           3596664-3596837,3597647-3598069,3598362-3598595,
           3598720-3598993,3599390-3599523,3599572-3599634,
           3599759-3599846,3599919-3599989,3600898-3601010,
           3601836-3602004,3602580-3602671,3602819-3603295,
           3603736-3604090
          Length = 888

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -2

Query: 806 LHLPFPNSEDRIVWLSFSATYSACHHQYRT*STSHEFCSLSFVLKQ 669
           L L  P S    VW + +      H ++R    SH FCS SF + Q
Sbjct: 24  LALAVPPSRSLQVWSNLARRGELTHPRHRRFHRSHRFCSGSFCVLQ 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,644,455
Number of Sequences: 37544
Number of extensions: 393158
Number of successful extensions: 791
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3794526552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)