Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_J15
         (1233 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46669-4|AAQ65208.1|  557|Caenorhabditis elegans Hypothetical pr...    31   2.2  
L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical pr...    29   8.9  

>U46669-4|AAQ65208.1|  557|Caenorhabditis elegans Hypothetical
           protein C41G11.4c protein.
          Length = 557

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -1

Query: 876 KTAECSISSIVGGHLG---PRESTPSSTFTLPQL*GSYSLAEFLSHIF 742
           +++ECSI   +GGH G   P  S       LPQ     S+  F +H+F
Sbjct: 453 RSSECSIKHSLGGHSGYSTPERSVEGFYHALPQFGLLGSILHFGNHVF 500


>L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical
           protein F54F2.1 protein.
          Length = 1226

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +2

Query: 809 DGVDSLGPRCPPTIDEMEHSAVFEIACSAPNPEP 910
           DG  S  P C PT DE +    +  AC   NP P
Sbjct: 713 DGSKS-APACSPTSDEPDSDGKWTFACDLGNPLP 745


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,290,814
Number of Sequences: 27780
Number of extensions: 337236
Number of successful extensions: 679
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3412067766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)