Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_J13
(1207 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar... 48 2e-06
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 37 0.005
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 33 0.060
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 32 0.18
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 32 0.18
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po... 32 0.18
SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po... 31 0.42
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 30 0.56
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ... 29 1.3
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 6.9
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po... 27 6.9
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 26 9.1
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p... 26 9.1
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po... 26 9.1
>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 48.4 bits (110), Expect = 2e-06
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = +1
Query: 634 GNSSYAVSKVGVTALTKVQQRMLSDRDIKVNAVHPGYVDTDMTS 765
G S YA SK G+ + TKV ++ + I+VNA+ PGYVDT M S
Sbjct: 147 GTSVYAASKAGLESFTKVLAAEVASKGIRVNAISPGYVDTPMLS 190
>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 292
Score = 37.1 bits (82), Expect = 0.005
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 4/137 (2%)
Frame = +1
Query: 106 GAHQGIGFAIVR-GLCKRFNGTVSLPSRAAARGXIAVETLXNAGLNPXSHQLXXTXKQSV 282
G+ +G+G+A+V+ GL + +N V SRA I +E L +L T +SV
Sbjct: 12 GSSKGLGYALVKVGLAQGYN--VIACSRAP--DTITIEHSKLLKL-----KLDVTDVKSV 62
Query: 283 ESFRAYIKTKSXGIDILINNAAIAFKQXATXPVAVQAEQTLYVNFFSLTSTCELLFPIVK 462
E+ K + +DI+INNA + + + VNF+ + + +++
Sbjct: 63 ETAFKDAKRRFGNVDIVINNAGYGLVGEFESYNIEEMHRQMNVNFWGVAYITKEALNLMR 122
Query: 463 ---NGGRVINVSSSAGH 504
GGR++ +SS AG+
Sbjct: 123 ESGKGGRILQISSVAGY 139
>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 33.5 bits (73), Expect = 0.060
Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 4/141 (2%)
Frame = +1
Query: 106 GAHQGIGFAIVRGLCKRFNGTVSLPSRAAAR-GXIAVETLXNAGLNPXSHQLXXTXKQSV 282
GA GIG + + K + L +R + IA E ++ +L + +S+
Sbjct: 13 GASSGIGKSTAFEIAKVAKVKLILAARRFSTVEEIAKELESKYEVSVLPLKLDVSDLKSI 72
Query: 283 ESFRAYIKTKSXGIDILINNAAIAFKQXATXPVAVQAEQTLY-VNFFSLTSTCELLFPIV 459
+ + ID+LINNA +A + + T+ N + + + PI
Sbjct: 73 PGVIESLPKEFADIDVLINNAGLALGTDKVIDLNIDDAVTMITTNVLGMMAMTRAVLPIF 132
Query: 460 --KNGGRVINVSSSAGHLSRI 516
KN G ++NV S AG S +
Sbjct: 133 YSKNKGDILNVGSIAGRESYV 153
>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 236
Score = 31.9 bits (69), Expect = 0.18
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +1
Query: 322 IDILINNAAIAFKQXATXPVAVQAEQTLYVNFFSLTSTCELLFPIVK--NGGRVINVSSS 495
ID+L+NNA + Q N F + + PI + + G +INVSS
Sbjct: 43 IDVLLNNAGYSVYSPLESTTEEQIHNIFNTNVFGALEVIKAITPIFRSQHNGMIINVSSI 102
Query: 496 AGHLS 510
G ++
Sbjct: 103 GGKMT 107
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 31.9 bits (69), Expect = 0.18
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +1
Query: 322 IDILINNAAIAFKQXATXPVAVQAEQ---TLYVNFFSLTSTCELLFPIVKNGGRVINVSS 492
ID+L+NN IA++Q A + EQ T N FS + +K+G ++N SS
Sbjct: 122 IDVLVNN--IAYQQVAQSIEDIDDEQWDLTFKTNIFSFFWVTKAAISHMKSGSSIVNCSS 179
Query: 493 SAGHLSR 513
++ R
Sbjct: 180 INAYVGR 186
Score = 29.5 bits (63), Expect = 0.98
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 646 YAVSKVGVTALTKVQQRMLSDRDIKVNAVHPGYVDTDMTS 765
Y +K +TA T+ + I+VNAV PG + T + S
Sbjct: 192 YTSTKGAITAFTRGLSNQYAQHGIRVNAVAPGPIYTPLVS 231
>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 236
Score = 31.9 bits (69), Expect = 0.18
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +1
Query: 322 IDILINNAAIAFKQXATXPVAVQAEQTLYVNFFSLTSTCELLFPIVK--NGGRVINVSSS 495
ID+L+NNA + Q N F + + PI + + G +INVSS
Sbjct: 43 IDVLLNNAGYSVYSPLESTTEEQIHNIFNTNVFGALEVIKAITPIFRSQHNGMIINVSSI 102
Query: 496 AGHLS 510
G ++
Sbjct: 103 GGKMT 107
>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 30.7 bits (66), Expect = 0.42
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 634 GNSSYAVSKVGVTALTKVQQRMLSDRDIKVNAVHPGYVDTDMTS 765
G S+Y SK + K L+D ++HPG V TDM +
Sbjct: 154 GFSAYGQSKAAINFTMKELSVELADEHFTFISIHPGVVKTDMNA 197
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 30.3 bits (65), Expect = 0.56
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 718 KVNAVHPGYVDTDMTSHKGVLTIDEGASAPLFLALDAPDSVRGQYVW 858
+VN+V PGY+DTD+T + + + PD + G Y++
Sbjct: 186 RVNSVSPGYIDTDLTLYADENLRKKWKEYTPQARIGLPDELPGAYLY 232
>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 261
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +1
Query: 643 SYAVSKVGVTALTKVQQRMLSDRDIKVNAVHPGYVDTDMTSHK 771
+Y SK GV L K + + +VN V PGY +DMT K
Sbjct: 171 AYNTSKAGVIQLIK-SLAVEWRKFARVNCVSPGYTTSDMTGGK 212
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.6 bits (56), Expect = 6.9
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -3
Query: 887 SSQLTILQSFQTYWPLTESGASSARNRGADAPSSIVSTPLWEVMSVST*PGCTAFTLISL 708
S+ +T + T P+T S ++ + + STP+ +++ T+ T+++
Sbjct: 1773 STPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNT 1832
Query: 707 SESILC*TLVRAVTP-TLDTA 648
S I T+V + TP T TA
Sbjct: 1833 STPITSSTVVNSSTPITSSTA 1853
Score = 26.2 bits (55), Expect = 9.1
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = -3
Query: 887 SSQLTILQSFQTYWPLTESGASSARNRGADAPSSIVSTPLWEVMSVST*PGCTAFTLISL 708
S+ +T T P+T S ++ + + STP+ +++ T+ T+++
Sbjct: 993 STPITSSSVLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTPITSSTVVNT 1052
Query: 707 SESILC*TLVRAVTP-TLDTA 648
S I T+V + TP T TA
Sbjct: 1053 STPITSSTVVNSSTPITSSTA 1073
>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 26.6 bits (56), Expect = 6.9
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 640 SSYAVSKVGVTALTKVQQRMLSDRDIKVNAVHPGYVDTDMTSHK 771
++Y SK V L K ++ ++N+V PGY TDM ++
Sbjct: 170 AAYCASKAAVRQLCKALAVEWAEF-ARINSVSPGYFATDMPGYE 212
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 26.2 bits (55), Expect = 9.1
Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 4/138 (2%)
Frame = +1
Query: 106 GAHQGIGFAIVRGLCKRFNGTVSLPSRAAARGXIAVETLXNAGLNPXSHQLXXTXKQSVE 285
GA GIG + LCK F L R A + + +A L + Q + +E
Sbjct: 12 GAAGGIG----KVLCKMFT---ELGDRVAGIDIVDPSKVQDAAL---ALQADVSKADQIE 61
Query: 286 SFRAYIKTKSXGIDILINNAAIA----FKQXATXPVAVQAEQTLYVNFFSLTSTCELLFP 453
+ + ID+LINNA +A F+Q + L N+ + +
Sbjct: 62 TAIEKVIQTLGPIDVLINNAGLADDTPFEQLSHESWDHDVSLVLRGNYLTQRYVIPHMAK 121
Query: 454 IVKNGGRVINVSSSAGHL 507
K GG ++N+ S GH+
Sbjct: 122 QGK-GGSIVNIGSVNGHI 138
>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 254
Score = 26.2 bits (55), Expect = 9.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 640 SSYAVSKVGVTALTKVQQRMLSDRDIKVNAVHPGYVDTDM 759
S+Y SK + K L V ++HPG V+TDM
Sbjct: 157 SAYGQSKAALNYTMKEISFELEKDGFVVVSIHPGVVNTDM 196
>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 26.2 bits (55), Expect = 9.1
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +1
Query: 631 WGNSSYAVSKVGVTALTKVQQRMLSDRDIKVNAVHPGYVDTD 756
+ S Y SK + K L D V ++HPG V TD
Sbjct: 153 FNQSGYGQSKAALNFTMKEISFELQDEGFIVISIHPGMVRTD 194
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,750,699
Number of Sequences: 5004
Number of extensions: 68757
Number of successful extensions: 234
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 651443514
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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