Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_J08
         (1194 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    26   0.57 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    26   0.57 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   2.3  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    24   3.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   3.0  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 26.2 bits (55), Expect = 0.57
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 634 CFIIILYFQLLVFVIIFYNKIIS 566
           C  I  Y   L+F+I+FY++++S
Sbjct: 223 CIFIWAYVIPLIFIILFYSRLLS 245


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 26.2 bits (55), Expect = 0.57
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 634 CFIIILYFQLLVFVIIFYNKIIS 566
           C  I  Y   L+F+I+FY++++S
Sbjct: 223 CIFIWAYVIPLIFIILFYSRLLS 245


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 440 LCDCLDEKCPGCHFPCANCNSNKCGHECRINR 535
           +C C+  KCP  H P    N     + C ++R
Sbjct: 103 VCVCM-RKCPRRHRPVCASNGKIYANHCELHR 133


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 706 CTDLPEDGELEVEYF 662
           CT+ PEDG L + Y+
Sbjct: 122 CTERPEDGALILHYY 136


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 706 CTDLPEDGELEVEYF 662
           CT+ PEDG L + Y+
Sbjct: 122 CTERPEDGALILHYY 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,953
Number of Sequences: 438
Number of extensions: 4143
Number of successful extensions: 34
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40729338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)