Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_J05
         (1251 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    29   1.8  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    29   1.8  
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch...    28   3.1  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   4.1  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    27   5.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   5.4  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    27   7.2  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   9.5  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    26   9.5  

>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 295 KKVLEDI-EKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQNGQY 435
           K VLED+ +KDNE     SD+E+ V D E      F+ K     N +Y
Sbjct: 160 KGVLEDVLKKDNELKFNDSDEEDEVDDEEIESFNSFSRKMQTISNSRY 207


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 23/74 (31%), Positives = 37/74 (50%)
 Frame = +1

Query: 127 RWKRKCRAIKRXRYAVKXLARLKKMLGVKDEEKPAGSEVMESEQVIFLDAGDLKKSKKVL 306
           R +R+ R  +  R A + L R +KM  + D     G  V +   +  +   D+  SK V 
Sbjct: 482 RAERRQRFRQSLRAAERILVRSQKMNSLDDMSY--GLLVFQVNLMAIMSM-DMGLSKDVA 538

Query: 307 EDIEKDNEDVEMSS 348
           ED+ +D ED++ SS
Sbjct: 539 EDLLQDLEDIQSSS 552


>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 437

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +1

Query: 301 VLEDIEKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQN 426
           +LED E  N D E   DD++++      +   +N+K+LK++N
Sbjct: 6   MLEDDE--NYDFEFEDDDDDMIEPYVDVENCYYNSKSLKEEN 45


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 391 FSCRLHYRPQRFHHPNSFRRLHCPFRCLLILFC 293
           F C LH +  +  HP S  R HCPF   ++  C
Sbjct: 418 FDCGLH-KCSKTCHPISETRAHCPFATDVLTKC 449


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +1

Query: 175 KXLARLKKMLGVKDEEKPAGSEV 243
           + +A L+KMLG+K ++K A S++
Sbjct: 115 REIAHLEKMLGIKSKDKSAHSKI 137


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 278 PASRNITCSDSITSLPAGFSSSLTPSIF 195
           P S +   S SIT++ +G SSS  PS F
Sbjct: 546 PTSSSSDFSSSITTISSGISSSSIPSTF 573


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1076

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
 Frame = +1

Query: 115  SIRXRWKRKCRAIKRXRYAVKXLARLKKMLGVKDEEKPAGSEVMES-EQVIFLDAGDLKK 291
            S+R  + ++  ++ + RY+++ +A  +K   VK  E     + +E   + +     DLK 
Sbjct: 826  SVREDFDKQTSSLAQLRYSIQNVAHAQKESEVKYNELNEQVKTLEGYVETVLEKFNDLKI 885

Query: 292  SKKVLEDIEKDNEDVEMSSDDENVVVDSEGGKKRV 396
              KV E            + + NV V S+   K V
Sbjct: 886  ENKVPETAPDVVPSSYPPAAESNVSVSSDTSTKDV 920


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/28 (39%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = +1

Query: 247  ESEQVIFLDAGDLKKS-KKVLEDIEKDN 327
            E   +++ DA  ++K+ K+V+ED+EK+N
Sbjct: 1600 EEHSIVYEDAKLMEKTLKEVIEDLEKNN 1627


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 247 ESEQVIFLDAGDLKKSKKVLEDIEKDNEDVEMSS 348
           + E + +L   D+ K KK  E +EK N+D +  S
Sbjct: 54  QKEFLPYLTTEDVGKHKKTKESLEKSNDDSQKIS 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,796,030
Number of Sequences: 5004
Number of extensions: 39339
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 677627698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)