Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_J05
         (1251 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   4.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   7.4  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 282 IARVQEYNLLRFHNLTSSWFLFIFDAEHFFQ 190
           +A V + N + F  L S   +  +++EHFF+
Sbjct: 310 VAEVMDRNGVLFFGLLSDLAIGCWNSEHFFE 340


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 19/75 (25%), Positives = 36/75 (48%)
 Frame = +1

Query: 205 GVKDEEKPAGSEVMESEQVIFLDAGDLKKSKKVLEDIEKDNEDVEMSSDDENVVVDSEGG 384
           G+ D+  P   E  E+++ + LD+ D+ +    L+D     +DV+   +DE V+   +  
Sbjct: 311 GMNDDIPPETEEEEENDKKLDLDSIDMMQLPIQLDDGIDILDDVK--CEDERVISIPDKE 368

Query: 385 KKRVFNTKTLKDQNG 429
                N +T+   NG
Sbjct: 369 ITVPSNEETIDINNG 383


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -3

Query: 742 GGAPNPQRXXXXWGPXXPPKRGNP 671
           G  PNP +     GP   P   NP
Sbjct: 37  GSPPNPSQGPPPGGPPGAPPSQNP 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,190
Number of Sequences: 438
Number of extensions: 4293
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42742428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)