Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_J04
         (1292 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996...    31   2.0  
12_02_1174 - 26696869-26698191                                         26   3.2  
04_03_0977 + 21381857-21383757,21384299-21384458,21384669-213847...    29   8.0  
03_03_0249 + 15832086-15833261                                         29   8.0  

>10_06_0039 -
           9966744-9967535,9968241-9968482,9969021-9969223,
           9969333-9970645
          Length = 849

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 399 APXXPPAXPRELXDSLXXXXPPTPPPXPXT 310
           AP  PP  P    ++     PP PPP P T
Sbjct: 330 APPPPPPPPSRFNNTTPKPPPPPPPPEPPT 359


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 26.2 bits (55), Expect(2) = 3.2
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -3

Query: 396 PXXPPAXPRELXDSLXXXXPPTPPPXP 316
           P  PP    +   SL    PP PPP P
Sbjct: 138 PHRPPPVKPQPPPSLPPPPPPPPPPPP 164



 Score = 22.6 bits (46), Expect(2) = 3.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 339 PPTPPPXPXT 310
           PP+PPP P T
Sbjct: 187 PPSPPPPPPT 196


>04_03_0977 +
           21381857-21383757,21384299-21384458,21384669-21384717,
           21385117-21385169
          Length = 720

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +2

Query: 359 SXNSRGXAGGXWGALPXPXIXDPPP 433
           S   RG  GG W  LP P    PPP
Sbjct: 86  SLQRRGVGGGGWVQLPPPPPPPPPP 110


>03_03_0249 + 15832086-15833261
          Length = 391

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -2

Query: 454 LPQPXXRGXGVXDXRXRKSAPXPPRLSPGVXRFPXAAXTSHXSP 323
           LP+P     G+     R SAP  PR SP     P +A  +  SP
Sbjct: 14  LPRPPSHAAGLRRLSTRASAPTTPRASPATPS-PSSAAAAAPSP 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,914,183
Number of Sequences: 37544
Number of extensions: 241890
Number of successful extensions: 1311
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4027319592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)