Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_J04
         (1292 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical ...    31   1.8  
AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    30   4.1  
Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical pr...    25   8.0  

>AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical
           protein D1037.1 protein.
          Length = 786

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 387 PPAXPRELXDSLXXXXPPTPPPXPXTXF 304
           PPA P+ L +      PPTPPP P   +
Sbjct: 503 PPAPPQFLPNPTDSFRPPTPPPLPSVLY 530


>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 268 protein.
          Length = 881

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -3

Query: 402 RAPXXPPAXPRELXDSLXXXXPPTPPPXPXT 310
           +A   PP  P  L   L    PP PPP P T
Sbjct: 64  KATPPPPPPPPPLISILQQAPPPPPPPPPPT 94


>Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical
           protein Y48E1B.1 protein.
          Length = 497

 Score = 25.4 bits (53), Expect(2) = 8.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 387 PPAXPRELXDSLXXXXPPTPPPXP 316
           P A P E+ +      PP PPP P
Sbjct: 338 PAATPVEITEIPPIISPPAPPPPP 361



 Score = 21.8 bits (44), Expect(2) = 8.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 339 PPTPPPXPXT 310
           PP PPP P T
Sbjct: 363 PPPPPPPPQT 372


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,235,633
Number of Sequences: 27780
Number of extensions: 142716
Number of successful extensions: 490
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3620756926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)