Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_J02
(1300 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 36 0.016
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.11
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.14
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.35
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.80
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 1.9
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 28 3.2
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 27 5.7
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 27 7.5
SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ... 26 9.9
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 35.5 bits (78), Expect = 0.016
Identities = 26/111 (23%), Positives = 26/111 (23%), Gaps = 2/111 (1%)
Frame = -1
Query: 1180 PPXGXPPPXXXXXGPPXKXPXXXXXPXTPXXXXPPXXKKXXXXPXXGXP--XPXXPPPXX 1007
P PP PP P P PP K P P P P P
Sbjct: 1107 PSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSV 1166
Query: 1006 PPPPPXXGGGGXXXXXXXXXXXXXXXXXXXXPPPRXXGXGPPPPPPXXXXP 854
PP G PP G PP PP P
Sbjct: 1167 AAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAP 1217
Score = 31.5 bits (68), Expect = 0.26
Identities = 28/121 (23%), Positives = 29/121 (23%), Gaps = 13/121 (10%)
Frame = -1
Query: 1177 PXGXPP----------PXXXXXGPPXKXPXXXXXPXTPXXXXPPXXKKXXXXPXXGXP-- 1034
P G PP P PP P P PP K P P
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSG 1138
Query: 1033 -XPXXPPPXXPPPPPXXGGGGXXXXXXXXXXXXXXXXXXXXPPPRXXGXGPPPPPPXXXX 857
P P PP P G P P+ PP PPP
Sbjct: 1139 APPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAP 1198
Query: 856 P 854
P
Sbjct: 1199 P 1199
Score = 30.7 bits (66), Expect = 0.46
Identities = 16/59 (27%), Positives = 16/59 (27%)
Frame = -1
Query: 1180 PPXGXPPPXXXXXGPPXKXPXXXXXPXTPXXXXPPXXKKXXXXPXXGXPXPXXPPPXXP 1004
P G PP PP P P P PP P P PP P
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 29.5 bits (63), Expect = 1.1
Identities = 27/122 (22%), Positives = 27/122 (22%), Gaps = 13/122 (10%)
Frame = -1
Query: 1180 PPXGXPPPXXXXXGPPXKXPXXXXXPXTPXXXXPPXXKKXXXXPXXGXP----------- 1034
P PP PP P P PP K P P
Sbjct: 1126 PSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPA 1185
Query: 1033 --XPXXPPPXXPPPPPXXGGGGXXXXXXXXXXXXXXXXXXXXPPPRXXGXGPPPPPPXXX 860
P PPP PP P G P P PP P P
Sbjct: 1186 AGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSE 1245
Query: 859 XP 854
P
Sbjct: 1246 AP 1247
Score = 27.9 bits (59), Expect = 3.2
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +1
Query: 694 GXPPPXGX*KNPPPXPXGGXPPPXXFXXXGXPPXXXPPXAP 816
G PP PP P PP G PP P AP
Sbjct: 1177 GIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAP 1217
Score = 26.6 bits (56), Expect = 7.5
Identities = 12/41 (29%), Positives = 12/41 (29%)
Frame = -3
Query: 335 PPXXPQXXXXPPXXXGGGPPXXXXXXXGGXPXPPPXGGXPP 213
PP PP G P P P P G PP
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.7 bits (71), Expect = 0.11
Identities = 17/50 (34%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Frame = -2
Query: 1137 PPKXXXXXXXPXXXPXXXPPPXXKXXXXPPXGGPP--XXXXPPXXXPPPP 994
PP P P PPP PP PP PP PPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 32.7 bits (71), Expect = 0.11
Identities = 20/56 (35%), Positives = 20/56 (35%)
Frame = -1
Query: 1036 PXPXXPPPXXPPPPPXXGGGGXXXXXXXXXXXXXXXXXXXXPPPRXXGXGPPPPPP 869
P P P PPP P GG PPP G GPPPPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGG-----------------PPPPPPPPGVAGAGPPPPPP 780
Score = 31.9 bits (69), Expect = 0.20
Identities = 20/64 (31%), Positives = 20/64 (31%)
Frame = -1
Query: 1165 PPPXXXXXGPPXKXPXXXXXPXTPXXXXPPXXKKXXXXPXXGXPXPXXPPPXXPPPPPXX 986
PPP P P P PP P G PPP PPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP-----PPPGVAGAGPPPP--PPPPPAV 785
Query: 985 GGGG 974
GG
Sbjct: 786 SAGG 789
Score = 31.5 bits (68), Expect = 0.26
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = -1
Query: 913 PPPRXXGXGPPPPPPXXXXPXGXXXXPXGXPKGGPXGG 800
PPP GPPPPPP P P GG
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = +1
Query: 700 PPPXGX*KNPPPXPXGGXPPPXXFXXXGXPPXXXPPXAPLWGXR 831
PPP PPP P PPP PP PP G R
Sbjct: 752 PPPAPIMGGPPPPP----PPPGVAGAGPPPPPPPPPAVSAGGSR 791
Score = 27.5 bits (58), Expect = 4.3
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +1
Query: 643 PXXXPPPXGGXVGGFXXGXPPPXGX*KNPPPXPXGGXPPP 762
P PPP +GG PPP PPP P PPP
Sbjct: 748 PIPVPPP-APIMGGPPPPPPPPGVAGAGPPPPP---PPPP 783
Score = 26.6 bits (56), Expect = 7.5
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = -1
Query: 682 PPPXPPXGGXXXXXPGAXKXXXGXPPPXGGP 590
PPP P GG P G PPP P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.1 bits (67), Expect = 0.35
Identities = 17/58 (29%), Positives = 17/58 (29%)
Frame = -2
Query: 1170 GXPPPXXXXXXPPKXXXXXXXPXXXPXXXPPPXXKXXXXPPXGGPPXXXXPPXXXPPP 997
G P PP P PPP PP PP PP PPP
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVP--PPPSAPPMPAGPPSAPPPP 1734
Score = 31.1 bits (67), Expect = 0.35
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +1
Query: 703 PPXGX*KNPPPXPXGGXPPPXXFXXXGXPPXXXPPXAP 816
PP PPP P PPP PP PP P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 29.9 bits (64), Expect(2) = 0.14
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = -1
Query: 910 PPRXXGXGPPPPPPXXXXPXGXXXXPXGXPKGGP 809
PP+ PPPPP P P G P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732
Score = 28.7 bits (61), Expect = 1.9
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = -1
Query: 1081 PPXXKKXXXXPXXGXPXPXXPPPXXPPPP 995
PP + P P P PP PPPP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPP 1718
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = -1
Query: 1081 PPXXKKXXXXPXXGXPXPXXPPPXXPPPPP 992
PP P P P PP PPP P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 21.0 bits (42), Expect(2) = 0.14
Identities = 8/22 (36%), Positives = 8/22 (36%)
Frame = -1
Query: 700 GXPGXNPPPXPPXGGXXXXXPG 635
G P PPP P PG
Sbjct: 1726 GPPSAPPPPLPASSAPSVPNPG 1747
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 31.1 bits (67), Expect = 0.35
Identities = 23/67 (34%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Frame = +3
Query: 993 GGGGGXXG--GGXXGXGXPXXGXXXXFXXXG--GXXXXGVXGXXXXXGXFXGGPXXXXXG 1160
G GG G GG G P G F G G G G G F GGP G
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG 243
Query: 1161 GGXPXGG 1181
G GG
Sbjct: 244 PGGFGGG 250
Score = 26.6 bits (56), Expect = 7.5
Identities = 19/59 (32%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Frame = +2
Query: 995 GGGGXXXGGXXXXGGPPXG--GXXXFFXXGGGXXXGXXXGXXXXXXFXGGXXXXXXGGG 1165
GG G GG GG P G G F G G G G GG G G
Sbjct: 214 GGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272
Score = 26.2 bits (55), Expect = 9.9
Identities = 18/61 (29%), Positives = 18/61 (29%)
Frame = +1
Query: 214 GGXPPXGGGXGXPPXXXXXXXGGPPPXXXGGXXXXXGXXGGXXGXXXPXXXGXXGGSPXX 393
GG GGG G PP G G G GG G G GG
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGF 247
Query: 394 G 396
G
Sbjct: 248 G 248
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 29.9 bits (64), Expect = 0.80
Identities = 20/67 (29%), Positives = 20/67 (29%), Gaps = 4/67 (5%)
Frame = -1
Query: 1180 PPXGXPP-PXXXXXGPPXKXPXXXXXPXTPXXXXPP-XXKKXXXXPXXGXPXPXXPPPXX 1007
PP PP P P P P P PP P P PP
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198
Query: 1006 P--PPPP 992
P PPPP
Sbjct: 199 PKVPPPP 205
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/35 (31%), Positives = 12/35 (34%)
Frame = -1
Query: 1096 PXXXXPPXXKKXXXXPXXGXPXPXXPPPXXPPPPP 992
P PP + P P P PPP PP
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPP 159
Score = 26.6 bits (56), Expect = 7.5
Identities = 18/65 (27%), Positives = 18/65 (27%), Gaps = 2/65 (3%)
Frame = -1
Query: 1180 PPXGXPPPXXXXXGPPXKXPXXXXXPXTPXXXXPPXXKKXXXXPXXGXPXPXXP--PPXX 1007
P PP PP P P PP K P P P P P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIP-SSLPPPAQPAAPVKS 183
Query: 1006 PPPPP 992
PP P
Sbjct: 184 PPSAP 188
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.5 bits (63), Expect = 1.1
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -1
Query: 1051 PXXGXPXPXXPPPXXPPPPPXXG 983
P P P PP PPPPP G
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPG 31
Score = 27.5 bits (58), Expect = 4.3
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -2
Query: 1053 PPXGGPPXXXXPPXXXPPPP 994
PP PP PP PPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPP 28
Score = 27.1 bits (57), Expect = 5.7
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -2
Query: 885 PPPPPPGXXXPRXP 844
PPPPPPG P P
Sbjct: 11 PPPPPPGFEPPSQP 24
Score = 23.8 bits (49), Expect(2) = 1.1
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -1
Query: 1021 PPPXXPPPPPXXG 983
PP PPPPP G
Sbjct: 5 PPGNPPPPPPPPG 17
Score = 23.8 bits (49), Expect(2) = 1.4
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -1
Query: 1018 PPXXPPPPPXXGG 980
PP PPPPP G
Sbjct: 5 PPGNPPPPPPPPG 17
Score = 23.8 bits (49), Expect(2) = 1.1
Identities = 10/17 (58%), Positives = 10/17 (58%), Gaps = 2/17 (11%)
Frame = -1
Query: 913 PPPRXXGXGPP--PPPP 869
PPP G PP PPPP
Sbjct: 11 PPPPPPGFEPPSQPPPP 27
Score = 23.4 bits (48), Expect(2) = 1.4
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = -1
Query: 913 PPPRXXGXGPPPPPP 869
PPP PPPPP
Sbjct: 14 PPPGFEPPSQPPPPP 28
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 1.1
Identities = 28/126 (22%), Positives = 28/126 (22%), Gaps = 10/126 (7%)
Frame = -1
Query: 1180 PPXGXPPPXXXXXGPPXKXPXXXXX----PXTPXXXXPPXXKKXXXXPXXGXPXPXXPPP 1013
PP PP PP P P PP PP
Sbjct: 253 PPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPP 312
Query: 1012 XXPPPP------PXXGGGGXXXXXXXXXXXXXXXXXXXXPPPRXXGXGPPPPPPXXXXPX 851
PPP P G G P P PPPPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPST 372
Query: 850 GXXXXP 833
G P
Sbjct: 373 GRQPPP 378
Score = 27.1 bits (57), Expect = 5.7
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Frame = -2
Query: 1095 PXXXPPPXXKXXXXPPXG-GPPXXXXPPXXXPPPP 994
P PPP + PP G G PP PPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPP--PPPPP 343
Score = 26.2 bits (55), Expect = 9.9
Identities = 22/90 (24%), Positives = 22/90 (24%), Gaps = 2/90 (2%)
Frame = +3
Query: 594 PPXGGGXPXXXXX--APGXXXXXPPXGGXGGGFXPGXPPPXXXXXXXXXXXXXXXXXXXX 767
PP G P AP PP P PPP
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTS 413
Query: 768 FXXPGXXPPXXPPXGPPLGXPXGXXXXPXG 857
P PP PP PP P P G
Sbjct: 414 -TPPVPTPPSLPPSAPPSLPPSAPPSLPMG 442
Score = 26.2 bits (55), Expect = 9.9
Identities = 17/64 (26%), Positives = 17/64 (26%), Gaps = 2/64 (3%)
Frame = -1
Query: 1177 PXGXPPPXXXXXGPPXKXPXXXXXPXTPXXXXPPXXKKXXXXPXXGXPXPXXPP--PXXP 1004
P PP PP P PP P P PP P P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474
Query: 1003 PPPP 992
PPP
Sbjct: 475 APPP 478
Score = 26.2 bits (55), Expect = 9.9
Identities = 17/58 (29%), Positives = 17/58 (29%), Gaps = 2/58 (3%)
Frame = -3
Query: 380 PPXXPXXXGXXKPXXPPXXPQXXXXPPXXXG--GGPPXXXXXXXGGXPXPPPXGGXPP 213
PP P P PP P PP G PP P PPP P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP-----AAPAPPPAPAPAP 484
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.7 bits (61), Expect = 1.9
Identities = 28/113 (24%), Positives = 29/113 (25%), Gaps = 5/113 (4%)
Frame = -1
Query: 1177 PXGXPPPXXXXXGPPXKXPXXXXXPXTPXXXXPPXXKKXXXXPXXGXPXPXXPPPXXPPP 998
P P P P P P PP P P PPP PPP
Sbjct: 143 PASQEPSASGVNAPTVSAPNSMVSP--PPSFQPPSAAA----PATSLPSDYNPPPP-PPP 195
Query: 997 PPXXGGGGXXXXXXXXXXXXXXXXXXXXPP---PRXXG--XGPPPPPPXXXXP 854
PP PP P+ PPPPPP P
Sbjct: 196 PPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPPTLPP 248
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 27.9 bits (59), Expect = 3.2
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 1030 PXXPPPXXPPPPPXXGGGG 974
P PPP PPPP GG
Sbjct: 942 PAFPPPPPPPPPLVSAAGG 960
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.1 bits (57), Expect = 5.7
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 913 PPPRXXGXGPPPPPP 869
P P+ G PPPPPP
Sbjct: 347 PTPQVQGSRPPPPPP 361
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 975 PPPPXXGGGGGXXGGGXXGXG 1037
PPPP GG G GG G G
Sbjct: 76 PPPPGAEGGPGAGFGGFPGAG 96
>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 26.2 bits (55), Expect = 9.9
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = -1
Query: 910 PPRXXGXGPPPPPPXXXXPXGXXXXPXGXPKGG 812
PP+ GP PP P P G P+GG
Sbjct: 16 PPQQAYGGPNYYPPQQNYPQQGYAPPQGYPQGG 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,655
Number of Sequences: 5004
Number of extensions: 41203
Number of successful extensions: 394
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 709422546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -