Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_J01
         (1185 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    46   8e-06
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    28   2.9  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    27   5.1  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    27   5.1  

>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 46.4 bits (105), Expect = 8e-06
 Identities = 49/186 (26%), Positives = 72/186 (38%), Gaps = 6/186 (3%)
 Frame = +2

Query: 437 KTSEDNHEYERIKQDLYEALSILPNKTHPFVEGKFEPHIVHEINKKKDFGEYKPFEFSEI 616
           KT E N    ++  DLY+    +PN T P V    E   V  + K       K     + 
Sbjct: 106 KTEEYNKIISKVTNDLYQYCLAVPNTTLPTVPVGPEDKAV-VVQKIGSPLVKKTGSLKDH 164

Query: 617 TRLLNL-MRIEKLGHTCGHKSYYFFGXXXXXXXXXIKYTVKKLLDDGFQLISVPDILASN 793
            ++ N  + +E      GH   Y  G           Y +   +  G+  +  P I+ ++
Sbjct: 165 LQIANEGINLEDAAQASGHSFCYTTGDIALLEMAITNYAMDFAISKGWCPVIPPTIVRTD 224

Query: 794 VLESCGMSVKSDR-TQIYSLD----PHHHGTDLXLSGTAEMSLAGLLANSVHNINDXPLK 958
           +  +CG   + +   QIY LD    P        L GTAE+SLA L      N N    K
Sbjct: 225 IALACGFQPRDEEGQQIYELDSYTSPLVSSPKQCLIGTAEISLAALGFKKTFN-NFTERK 283

Query: 959 LAAVSR 976
           +  VSR
Sbjct: 284 VVGVSR 289


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 32/116 (27%), Positives = 53/116 (45%)
 Frame = +2

Query: 224 VKMLYISSLIQNYRIVYSTKGFKRFFSQIYPNYNLQYYCNPKNHEEIKQNIKIRKGVGDI 403
           +K  YISSL + +  +   +  +   SQ       +  C PK    IK N+K     G+ 
Sbjct: 1   MKFSYISSLPKGHNHICCKQAGRFLSSQADLKKYSESLCLPKTSFPIKPNVK-----GNN 55

Query: 404 DRVMQLYKIITKTSEDNHEYERIKQDLYEALSILPNKTHPFVEGKFEPHIVHEINK 571
           ++    +K IT    D +E++  K++L +  S +     PF  G+   HI H +NK
Sbjct: 56  EK---YFKSIT---SDLYEWQ--KENLNKEDSFVLLDGPPFANGRL--HIGHALNK 101


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = +2

Query: 299 FSQIYPNYNLQYYCNPKNHEEIKQNIKIRKGVGDIDRVMQLYKIITKTSEDNHEYERIKQ 478
           FS I    N +   N +N +E    I I +       V+Q   I+  ++ED+HE  ++ +
Sbjct: 509 FSNISKKRNSEE-ANDEN-DETNLKIPIPEKKRKFQEVLQSKNILVSSTEDSHEPVKVTE 566

Query: 479 DLYEALSI 502
           D   A+ +
Sbjct: 567 DSQTAIHV 574


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 380 IRKGVGDIDRVMQLYKIITKTSEDNHEYERIKQDLYEA 493
           +RKG+   D + Q+ KI+ K  ++ +EY  +  + YE+
Sbjct: 10  LRKGIFK-DEITQIEKILLKMEDNTYEYVDVFLEKYES 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,979,522
Number of Sequences: 5004
Number of extensions: 77286
Number of successful extensions: 213
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 637498240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)