Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_J01
         (1185 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58753-9|AAC24441.2|  441|Caenorhabditis elegans Seryl trna synt...   101   8e-22
AB016796-1|BAA74732.1|  441|Caenorhabditis elegans Seryl-tRNA sy...   101   8e-22
AC024807-1|AAF59529.5|  704|Caenorhabditis elegans Hypothetical ...    32   0.69 
U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p...    31   2.1  
U50309-3|AAG24138.2|  343|Caenorhabditis elegans Seven tm recept...    29   6.4  

>U58753-9|AAC24441.2|  441|Caenorhabditis elegans Seryl trna
            synthetase protein 1 protein.
          Length = 441

 Score =  101 bits (243), Expect = 8e-22
 Identities = 72/252 (28%), Positives = 119/252 (47%), Gaps = 12/252 (4%)
 Frame = +2

Query: 314  PNYNLQYYCNPKNHEEIKQNIKIRKGVGDIDRVMQLYKIITKTSE----------DNHEY 463
            P+ N ++  + KN E I++NI  RKGVGDID+V + + +I K  +             +Y
Sbjct: 43   PDLNFEFLLDEKNLEAIRENILNRKGVGDIDKVHKKWAVIQKMMKSGEKQTNGAVSEQKY 102

Query: 464  ERIKQDLYEALSILPNKTHPFVEGKFEPHIVHEINKKKDFGEYKPFEFSEITRLLNLMR- 640
            +++  +LY+   ++PN T   V    E     +     ++GE +  E     +L+   R 
Sbjct: 103  KQLWDELYDEAILIPNMTQDGVPRGSE----DQAKIVAEWGEKREDECLTAEKLVQTWRS 158

Query: 641  IEKLGHTCGHKSYYFFGXXXXXXXXXIKYTVKKLLDDGFQLISVPDILASNVLESCGMSV 820
            +       G +SY F G         + Y  +++   GF+ I+VPDI++  V ++CG+  
Sbjct: 159  LLHPTDASGQRSYVFLGALASLEKALLDYAHERVCALGFRPITVPDIVSGEVTQACGVMQ 218

Query: 821  KSDRTQIYSLDPHHHGTDLXLSGTAEMSLAGLLANSVHNINDXPLKLAAVSRCXXXXXXX 1000
            +SD    Y+L      T   LSGTAEM +A  L     N +  P++L ++SRC       
Sbjct: 219  RSDHPIQYTLAGEESHT--KLSGTAEMGIAAFLRGRTFNQDQLPIRLVSLSRCFRTEISK 276

Query: 1001 XXXXXD-YRVHQ 1033
                   YRVH+
Sbjct: 277  SASEAKLYRVHE 288


>AB016796-1|BAA74732.1|  441|Caenorhabditis elegans Seryl-tRNA
            synthetase protein.
          Length = 441

 Score =  101 bits (243), Expect = 8e-22
 Identities = 72/252 (28%), Positives = 119/252 (47%), Gaps = 12/252 (4%)
 Frame = +2

Query: 314  PNYNLQYYCNPKNHEEIKQNIKIRKGVGDIDRVMQLYKIITKTSE----------DNHEY 463
            P+ N ++  + KN E I++NI  RKGVGDID+V + + +I K  +             +Y
Sbjct: 43   PDLNFEFLLDEKNLEAIRENILNRKGVGDIDKVHKKWAVIQKMMKSGEKQTNGAVSEQKY 102

Query: 464  ERIKQDLYEALSILPNKTHPFVEGKFEPHIVHEINKKKDFGEYKPFEFSEITRLLNLMR- 640
            +++  +LY+   ++PN T   V    E     +     ++GE +  E     +L+   R 
Sbjct: 103  KQLWDELYDEAILIPNMTQDGVPRGSE----DQAKIVAEWGEKREDECLTAEKLVQTWRS 158

Query: 641  IEKLGHTCGHKSYYFFGXXXXXXXXXIKYTVKKLLDDGFQLISVPDILASNVLESCGMSV 820
            +       G +SY F G         + Y  +++   GF+ I+VPDI++  V ++CG+  
Sbjct: 159  LLHPTDASGQRSYVFLGALASLEKALLDYAHERVCALGFRPITVPDIVSGEVTQACGVMQ 218

Query: 821  KSDRTQIYSLDPHHHGTDLXLSGTAEMSLAGLLANSVHNINDXPLKLAAVSRCXXXXXXX 1000
            +SD    Y+L      T   LSGTAEM +A  L     N +  P++L ++SRC       
Sbjct: 219  RSDHPIQYTLAGEESHT--KLSGTAEMGIAAFLRGRTFNQDQLPIRLVSLSRCFRTEISK 276

Query: 1001 XXXXXD-YRVHQ 1033
                   YRVH+
Sbjct: 277  SASEAKLYRVHE 288


>AC024807-1|AAF59529.5|  704|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.1 protein.
          Length = 704

 Score = 32.3 bits (70), Expect = 0.69
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 548 HIVHEINKKKDFGEYKPFEFSEITRLLNLM 637
           H+V  INK KD+  ++P +   +TR+  L+
Sbjct: 76  HVVRLINKAKDYSSFQPLDLDTVTRISKLV 105


>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
           protein R11G1.1 protein.
          Length = 1656

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 982 CTPAYCS*FQRXIINIVYTVCK*SS-QRHFCSTRKTKV 872
           C P YC+ ++  +  IVY  C  SS Q  +CST K K+
Sbjct: 73  CGPVYCADYKDALPCIVYPKCDGSSKQLPWCSTSKEKL 110


>U50309-3|AAG24138.2|  343|Caenorhabditis elegans Seven tm receptor
           protein 145 protein.
          Length = 343

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = -1

Query: 531 STKGWVLFGKILSASYKSCFILSYS*LSSEVFVIILYNCITLSISPTPFRILIFCF 364
           S K +   G  L+  Y +CF L  S LS++ F   L  C   S+S    RIL + F
Sbjct: 76  SLKYFKTLGFNLTCLYCACFALVISLLSAQFFYRFLAVCKPHSLSHGEERILFYLF 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,564,252
Number of Sequences: 27780
Number of extensions: 416771
Number of successful extensions: 967
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3245116438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)