Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_I23
         (1158 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   5.0  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   6.5  
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    26   8.7  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    26   8.7  

>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 599 CFFKAEYMSWFKNLTKNISFIL 664
           CFFK E+++  K + +NI  I+
Sbjct: 900 CFFKTEFITTLKRINRNIQVIV 921


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +2

Query: 599 CFFKA--EYMSWFKNLTKNISFILLDYKINKCIYKSAF 706
           CF+K+  EY SWF N+T N S I + + I+   Y SA+
Sbjct: 319 CFYKSYYEYRSWFHNVT-NFSRIWVMH-ISAYWYYSAY 354


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = -1

Query: 651 IFFVKFLNHDMYSALKKQSDYLICTIIFKSI*KTKSLTYKHFKH 520
           IF +   +  + ++++   DY++   +FKS+ K++    K F+H
Sbjct: 222 IFLINSFHSKVITSIQDLEDYMV---VFKSLIKSREQKVKQFEH 262


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -3

Query: 448 KASQLRSQNGCLSTGSFLSRFTRSASPKASIGSRIVVVLISSP 320
           K+ Q   ++ C+S+ SF++           +G +I+ VL+  P
Sbjct: 204 KSFQRNDKSMCISSSSFIAHLINQKIAHEIVGLQILAVLLERP 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,058,292
Number of Sequences: 5004
Number of extensions: 58424
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 619568602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)