Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_I22
(1179 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4G3H2 Cluster: Putative dsRNA-dependent RNA polymerase... 55 3e-06
UniRef50_O15925 Cluster: RNA-dependent RNA polymerase; n=12; Cry... 53 2e-05
UniRef50_A4FRF7 Cluster: RNA-dependent RNA polymerase; n=10; Par... 43 0.013
UniRef50_Q85055 Cluster: Atkinsonella hypoxylon virus segment 1;... 42 0.041
UniRef50_A7REC6 Cluster: Putative RdRp; n=1; Vicia faba partitiv... 40 0.12
UniRef50_Q7TDZ9 Cluster: RNA-dependent RNA polymerase; n=1; Oyst... 39 0.29
UniRef50_O36966 Cluster: Replicase polyprotein; n=1; Drosophila ... 36 1.5
UniRef50_Q8QY51 Cluster: Putative RNA dependent RNA polymerase; ... 36 2.7
UniRef50_Q5DM98 Cluster: Non-structural polyprotein; n=5; Taura ... 35 3.6
>UniRef50_Q4G3H2 Cluster: Putative dsRNA-dependent RNA polymerase;
n=1; Penicillium stoloniferum virus F|Rep: Putative
dsRNA-dependent RNA polymerase - Penicillium
stoloniferum virus F
Length = 538
Score = 55.2 bits (127), Expect = 3e-06
Identities = 44/154 (28%), Positives = 68/154 (44%)
Frame = +2
Query: 515 TSPGFPFIRTHPGKKKEYIINNYLPKFNNYWTRVGNKQKVSPLPDCAAFARSHISKVGTN 694
++ GF F PGKKK ++ + V + +KV +P R H+S++
Sbjct: 143 SAAGFSF----PGKKKSEVVEEAFDVASYIAHFVASDRKVF-IPPAKLALRGHLSEIDEL 197
Query: 695 KVRPVWAYPVEAIVEEARFAVPLQSALKTQKIGKQFAYGMELLKGGMTWLNSKLQXSRRX 874
K R VW +P E + E ++A+P L+ Q + + +G +G M L L
Sbjct: 198 KTRAVWVFPFEISILEGKWALPYYKFLE-QNV-PEVHFG----EGAMQRLAKTLMTDVAS 251
Query: 875 DPGSKFVMLXYTXFDSSAPAWLIRDVFGIXKDWF 976
V L ++ FD+S WLI D F I D F
Sbjct: 252 HSECTEVTLDWSGFDTSVSNWLIDDAFDIMFDSF 285
>UniRef50_O15925 Cluster: RNA-dependent RNA polymerase; n=12;
Cryptosporidium parvum|Rep: RNA-dependent RNA polymerase
- Cryptosporidium parvum
Length = 524
Score = 52.8 bits (121), Expect = 2e-05
Identities = 50/189 (26%), Positives = 80/189 (42%), Gaps = 1/189 (0%)
Frame = +2
Query: 467 LEPLKLDEAVKAIPGSTSPGFPFIRTHPGKKKEYIINNYLPKF-NNYWTRVGNKQKVSPL 643
L + E+ + +P STS G PF G K Y N + +F + W RV + ++ L
Sbjct: 92 LNVTSVSESFRTLPKSTSAGLPF---KSGCTK-YEARNKMMRFARSQWDRVSKELQLQVL 147
Query: 644 PDCAAFARSHISKVGTNKVRPVWAYPVEAIVEEARFAVPLQSALKTQKIGKQFAYGMELL 823
P C AR + K G NK R +WAYP + E ++ ++ IG + L
Sbjct: 148 P-CRLGARCQLRKRGENKPRLIWAYPGYLSIIENQYLTAIKKVPPPNFIG----WSTNWL 202
Query: 824 KGGMTWLNSKLQXSRRXDPGSKFVMLXYTXFDSSAPAWLIRDVFGIXKDWFIMDDHDSVN 1003
GG + LN L + + ++ FD++ LI F I + F D
Sbjct: 203 DGGKS-LNRLLFGDKW--TWQSIAQIDFSSFDATVRTELIFHAFKILRSLF---DLTRTE 256
Query: 1004 QVLVDYLXY 1030
+++D L +
Sbjct: 257 NIMLDQLRH 265
>UniRef50_A4FRF7 Cluster: RNA-dependent RNA polymerase; n=10;
Partitiviridae|Rep: RNA-dependent RNA polymerase -
Botryotinia fuckeliana partitivirus 1
Length = 540
Score = 43.2 bits (97), Expect = 0.013
Identities = 44/170 (25%), Positives = 64/170 (37%), Gaps = 4/170 (2%)
Frame = +2
Query: 470 EPLKLDEAVKAIPGSTSPGFPFIRTHPGKKKEYIINNYLPKFNNYWTRVGNKQKVSP--- 640
EPL E + + TS G F+ G E I + ++ + + K + +P
Sbjct: 143 EPLDWHEVGQFLRRDTSAGSTFMGQKKGDVMEEIYHE--ARWLGHRMKQDGKGRFNPTKM 200
Query: 641 -LPDCAAFARSHISKVGTNKVRPVWAYPVEAIVEEARFAVPLQSALKTQKIGKQFAYGME 817
P C A R +S+ K R VW YP E + E F PL G
Sbjct: 201 RFPPCLAGQRGGMSERDDPKTRLVWIYPAEMLTVEG-FYAPLMYRDFMNDPNSPMLNGKS 259
Query: 818 LLKGGMTWLNSKLQXSRRXDPGSKFVMLXYTXFDSSAPAWLIRDVFGIXK 967
+ W KL+ G + ++ FD+ PAWLIR F I +
Sbjct: 260 AQRLYTEWC-CKLR------EGETLYGIDFSSFDTKVPAWLIRIAFDILR 302
>UniRef50_Q85055 Cluster: Atkinsonella hypoxylon virus segment 1;
n=5; root|Rep: Atkinsonella hypoxylon virus segment 1 -
Atkinsonella hypoxylon virus
Length = 665
Score = 41.5 bits (93), Expect = 0.041
Identities = 33/109 (30%), Positives = 51/109 (46%)
Frame = +2
Query: 665 RSHISKVGTNKVRPVWAYPVEAIVEEARFAVPLQSALKTQKIGKQFAYGMELLKGGMTWL 844
RSHISK KVRPV+ P+ I E PL + + +K YG+E ++GGM
Sbjct: 260 RSHISKRDNLKVRPVYNAPMIYIRIECMLFYPLLA--QARKRDCCIMYGLETIRGGMN-- 315
Query: 845 NSKLQXSRRXDPGSKFVMLXYTXFDSSAPAWLIRDVFGIXKDWFIMDDH 991
+ R + + F+++ ++ FD AP + F I+ DH
Sbjct: 316 ----ELERISNAFNSFLLIDWSRFDHLAPFTISNFFFKKWLPTKILIDH 360
>UniRef50_A7REC6 Cluster: Putative RdRp; n=1; Vicia faba
partitivirus 1|Rep: Putative RdRp - Vicia faba
partitivirus 1
Length = 576
Score = 39.9 bits (89), Expect = 0.12
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Frame = +2
Query: 656 AFARSH-ISKVGTNKVRPVWAYPVEAIVEEARFAVPLQSALKTQKIGKQFAYGMELLKGG 832
AFAR H + +KVR V+ P ++ E F PLQ +L + +G E L GG
Sbjct: 206 AFARQHLVEDDDPDKVRLVFGAPSTLLMAELMFIWPLQVSLLARGPQSPMLWGYETLTGG 265
Query: 833 MTWLNSKLQXSRRXDPGSKFVMLXYTXFDSSAPAWLIRDV 952
W S S + L ++ FD A +IRD+
Sbjct: 266 --WSRLFSWASDTMPRYSTVLTLDWSRFDKDARHTVIRDI 303
>UniRef50_Q7TDZ9 Cluster: RNA-dependent RNA polymerase; n=1; Oyster
mushroom isometric virus II|Rep: RNA-dependent RNA
polymerase - Oyster mushroom isometric virus II
Length = 610
Score = 38.7 bits (86), Expect = 0.29
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 5/104 (4%)
Frame = +2
Query: 656 AFARSHISK-----VGTNKVRPVWAYPVEAIVEEARFAVPLQSALKTQKIGKQFAYGMEL 820
AFAR HI + + KVR V+ P + E F PLQ+ L + +G E
Sbjct: 241 AFARQHIVEKKPGILAQPKVRLVFGAPFTLLTAELIFIWPLQTHLLLMQDFSPMLWGYET 300
Query: 821 LKGGMTWLNSKLQXSRRXDPGSKFVMLXYTXFDSSAPAWLIRDV 952
+ GG W + S + D L ++ FD A +I+D+
Sbjct: 301 ILGG--WYRLRGHLSGKIDTDKLVATLDWSGFDRYARHTVIKDI 342
>UniRef50_O36966 Cluster: Replicase polyprotein; n=1; Drosophila C
virus|Rep: Replicase polyprotein - Drosophila C virus
Length = 1759
Score = 36.3 bits (80), Expect = 1.5
Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 16/173 (9%)
Frame = +2
Query: 485 DEAVKAIPGSTSPGFPFI---RTHPGKKKEYIINNYLPKFNNYWTRVGNKQKVSPLPDCA 655
DE + AI +TSPGFP+ R PGK++ +NY + K + DCA
Sbjct: 1340 DEFMCAINRTTSPGFPYAQMKRNAPGKQQWMGFGEEFDFTSNYALAL-RKDVEQLIEDCA 1398
Query: 656 A-------FA------RSHISKVGTNKVRPVWAYPVEAIVEEARFAVPLQSALKTQKIGK 796
+ F R I+KV K R A P +V ++ +P + L +I
Sbjct: 1399 SGKISNVIFVDTLKDERRDIAKVNVGKTRVFSAGPQHFVVAFRQYFLPFAAWLMHNRISN 1458
Query: 797 QFAYGMELLKGGMTWLNSKLQXSRRXDPGSKFVMLXYTXFDSSAPAWLIRDVF 955
+ A G + + +L+ GS + + FD S A ++ +F
Sbjct: 1459 EVAVGTNVYSSDWERIAKRLKTK-----GSHVIAGDFGNFDGSLVAQILWAIF 1506
>UniRef50_Q8QY51 Cluster: Putative RNA dependent RNA polymerase;
n=1; Heterobasidion annosum P-type partitivirus|Rep:
Putative RNA dependent RNA polymerase - Heterobasidion
annosum P-type partitivirus
Length = 734
Score = 35.5 bits (78), Expect = 2.7
Identities = 28/95 (29%), Positives = 46/95 (48%)
Frame = +2
Query: 659 FARSHISKVGTNKVRPVWAYPVEAIVEEARFAVPLQSALKTQKIGKQFAYGMELLKGGMT 838
+ RS ISK+ KVRPV+ P+ ++ EA + L + + +K + E ++GGM
Sbjct: 285 YVRSQISKITKLKVRPVYNAPMLFLMLEAMLTLGLMA--QCRKPDNCILWSYETIRGGMH 342
Query: 839 WLNSKLQXSRRXDPGSKFVMLXYTXFDSSAPAWLI 943
L+ R + F+ Y+ FD AP +I
Sbjct: 343 ELH------RISTEFNVFMGFDYSRFDQLAPFTII 371
>UniRef50_Q5DM98 Cluster: Non-structural polyprotein; n=5; Taura
syndrome virus|Rep: Non-structural polyprotein - Taura
syndrome virus
Length = 2107
Score = 35.1 bits (77), Expect = 3.6
Identities = 45/194 (23%), Positives = 81/194 (41%), Gaps = 17/194 (8%)
Frame = +2
Query: 494 VKAIPGSTSPGFPFI-RTHPGKK--------KEYIINNYLPKFNNYWTRVGNKQKVSPLP 646
+ A+ STS GFP+ R GK +E+I++N P + ++ +K K +
Sbjct: 1694 MNALNRSTSAGFPYSSRKAKGKSGKQTWLGSEEFIVDN--PDLKEHVEKIVDKAKDGIVD 1751
Query: 647 -DCAAFA------RSHISKVGTNKVRPVWAYPVEAIVEEARFAVPLQSALKTQKIGKQFA 805
FA R + KV NK R A + R+ + + T +I +
Sbjct: 1752 VSLGIFAATLKDERRPLEKVQANKTRVFAASNQGLALAIRRYYLSFLDHVMTNRIDNEIG 1811
Query: 806 YGMELLKGGMTWLNSKLQXSRRXDPGSKFVMLXYTXFDSSAPAWLIRDVFGIXKDWFIMD 985
G+ + T + +KL+ G K + ++ FD S + ++ V I DW+ D
Sbjct: 1812 LGVNVYSYDWTRIVNKLKRV-----GDKVIAGDFSNFDGSLNSQILSRVSEIVTDWYGDD 1866
Query: 986 -DHDSVNQVLVDYL 1024
++ + L++YL
Sbjct: 1867 AENGLIRHTLLEYL 1880
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 866,184,435
Number of Sequences: 1657284
Number of extensions: 15224252
Number of successful extensions: 34573
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 33517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34566
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 117912272470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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