Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_I22
         (1179 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0790 + 25253363-25254136,25259037-25259897                       30   3.1  
12_02_0356 + 17915029-17916236,17932970-17933283,17933936-179342...    29   5.4  

>01_05_0790 + 25253363-25254136,25259037-25259897
          Length = 544

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = +2

Query: 392 PSTPXTKXPYYLECLSELKAEMSCILEPLKLDEAVKAIPGSTSPGFPFIRT---HPGKKK 562
           P     + PY L   S L AE++  +EP+ LD  V  + G+T+ G  ++         + 
Sbjct: 424 PEGTTCREPYLLR-FSPLFAELADDMEPVALDAQVTTLYGTTASGHKWLDPVVFFANPQP 482

Query: 563 EYIINNYLPKFNNYWTRVGNK 625
            Y + ++L      WTR G +
Sbjct: 483 AYRV-DFLGAVPREWTRAGGR 502


>12_02_0356 +
           17915029-17916236,17932970-17933283,17933936-17934244,
           17934613-17935439
          Length = 885

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +2

Query: 446 KAEMSCILEPLKLDEAVKAIPGSTS-PGFPFIRTHPGKKKEYIINNYLPKFNNYWTRVGN 622
           + E+S + +P++L    K    S    G+ +I  H G+ K ++  +   K   +   + +
Sbjct: 474 EVELSVLTKPVELKIVAKEFENSLKYSGYKYI--HQGEGKIHLQEHIAKKILQFPDAMND 531

Query: 623 KQKVSPLPDCAAFARSHISKV 685
           K+K+        +AR+HI+ +
Sbjct: 532 KKKLQQFLGLVNYARNHINNL 552


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,815,287
Number of Sequences: 37544
Number of extensions: 427271
Number of successful extensions: 954
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3608253564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)