Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_I21
         (1151 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...   256   6e-69
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    30   0.53 
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    26   8.6  

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score =  256 bits (626), Expect = 6e-69
 Identities = 122/238 (51%), Positives = 158/238 (66%), Gaps = 1/238 (0%)
 Frame = +3

Query: 279 VLSKT-LLSRYNXLPLPADKXLATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGS 455
           +LSK  +L++Y  LP    K +A YIWIDG   HLR K  TL+  P +   L +WNFDGS
Sbjct: 9   LLSKAAILNKYADLPQNG-KVMAEYIWIDGFN-HLRSKTMTLDAKPSSIDQLRVWNFDGS 66

Query: 456 STNQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCK 635
           ST QA G+NSDT L P A+Y DPFRRG++ILV+   Y  +  P   N+R +C +  +K  
Sbjct: 67  STGQAPGNNSDTLLKPVAMYNDPFRRGDNILVLAACYTADGSPNGFNHRDACAKLLEKHA 126

Query: 636 DDEPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXXYYCGVGANKVFARDLVEAHYRCCLY 815
           D E WFGIEQEY +LD   R               +YCGVG  +VFARD+VEAHY+ CLY
Sbjct: 127 DKETWFGIEQEYTMLDYYDRPFGWPKGGFPGPQGPFYCGVGTGRVFARDIVEAHYKACLY 186

Query: 816 AGVPIAGTNAEVMPSQWEFQVGPSIGVHAGDDLWVARXILHRLXEEYGVIVTFDPKPV 989
           AG+ I+G NAEVMPSQWE+QVGP  G+  GD LW++R +LHR+ E++GV ++F PKP+
Sbjct: 187 AGINISGINAEVMPSQWEYQVGPCAGIEMGDQLWMSRFLLHRIAEDFGVKISFHPKPI 244


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 30.3 bits (65), Expect = 0.53
 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = +1

Query: 694 APSGGPRVVS---PHRKGHTTAVSVPTKSLPETLSKPTIDAVFMLAYRLPVQTLK*CLHS 864
           AP+  PR VS   P  +  TTA +V  K  P+T  +P+    F        +T K  L  
Sbjct: 301 APAPIPRPVSTLIPLTQVRTTASNV-IKPRPQTTERPSTAQSFRKGGGFLKKTFKKLLRR 359

Query: 865 GSSKSVPQLE 894
           GSSK  P L+
Sbjct: 360 GSSKRKPSLQ 369


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 401 QGAIFAPQVFARAVDPNVGGEXLVSRQWKXIVSTQ 297
           Q  IF     AR    +VGG    SR WK +  +Q
Sbjct: 292 QDVIFGVDALARERCVSVGGRDRTSRLWKIVEESQ 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,956,713
Number of Sequences: 5004
Number of extensions: 81050
Number of successful extensions: 195
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 615584238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)